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Report for CCDS93396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93396.1 Public Homo sapiens 3 RBP1 24 110 108 CCDS HistoryNCBI Gene:5947Re-query CCDS DB by CCDS ID:93396.1Re-query CCDS DB by GeneID:5947See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619087.4 ENSP00000482165.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619087.4Link to Ensembl Protein Viewer:ENSP00000482165.1Re-query CCDS DB by Nucleotide ID:ENST00000619087Re-query CCDS DB by Protein ID:ENSP00000482165
Original member Current member NCBI NM_001365940.2 NP_001352869.1 Accepted alive Link to Nucleotide Sequence:NM_001365940.2Link to Protein Sequence:NP_001352869.1Re-query CCDS DB by Nucleotide ID:NM_001365940Re-query CCDS DB by Protein ID:NP_001352869Link to BLAST:NP_001352869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352869.1 135 P09455-1 135 100% 0 0

Chromosomal Locations for CCDS 93396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 139517627 139517680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139518421 139518522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139538781 139538959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139539460 139539532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGCCAGTCGACTTCACTGGGTACTGGAAGATGTTGGTCAACGAGAATTTCGAGGAGTACCTGCGCGCCC
TCGACGTCAATGTGGCCTTGCGCAAAATCGCCAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGACGG
TGACCATATGATCATCCGCACGCTGAGCACTTTTAGGAACTACATCATGGACTTCCAGGTTGGGAAGGAG
TTTGAGGAGGATCTGACAGGCATAGATGACCGCAAGTGCATGACAACAGTGAGCTGGGACGGAGACAAGC
TCCAGTGTGTGCAGAAGGGTGAGAAGGAGGGGCGTGGCTGGACCCAGTGGATCGAGGGTGATGAGCTGCA
CCTGGAGATGAGAGTGGAAGGTGTGGTCTGCAAGCAAGTATTCAAGAAGGTGCAGTGA

Translation (135 aa):
MPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKE
FEEDLTGIDDRKCMTTVSWDGDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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