NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93418.1 Public Homo sapiens 3 SCHIP1 24 110 108 CCDS HistoryNCBI Gene:29970Re-query CCDS DB by CCDS ID:93418.1Re-query CCDS DB by GeneID:29970See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93418.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000689690.1 ENSP00000508586.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689690.1Link to Ensembl Protein Viewer:ENSP00000508586.1Re-query CCDS DB by Nucleotide ID:ENST00000689690Re-query CCDS DB by Protein ID:ENSP00000508586
Original member Current member NCBI NM_001394282.1 NP_001381211.1 Accepted alive Link to Nucleotide Sequence:NM_001394282.1Link to Protein Sequence:NP_001381211.1Re-query CCDS DB by Nucleotide ID:NM_001394282Re-query CCDS DB by Protein ID:NP_001381211Link to BLAST:NP_001381211.1
Original member Current member NCBI NM_001394283.1 NP_001381212.1 Accepted alive Link to Nucleotide Sequence:NM_001394283.1Link to Protein Sequence:NP_001381212.1Re-query CCDS DB by Nucleotide ID:NM_001394283Re-query CCDS DB by Protein ID:NP_001381212Link to BLAST:NP_001381212.1
Original member Current member NCBI NM_001394284.1 NP_001381213.1 Accepted alive Link to Nucleotide Sequence:NM_001394284.1Link to Protein Sequence:NP_001381213.1Re-query CCDS DB by Nucleotide ID:NM_001394284Re-query CCDS DB by Protein ID:NP_001381213Link to BLAST:NP_001381213.1
Original member Current member NCBI NM_001394285.1 NP_001381214.1 Accepted alive Link to Nucleotide Sequence:NM_001394285.1Link to Protein Sequence:NP_001381214.1Re-query CCDS DB by Nucleotide ID:NM_001394285Re-query CCDS DB by Protein ID:NP_001381214Link to BLAST:NP_001381214.1
Original member Current member NCBI NM_001394286.1 NP_001381215.1 Accepted alive Link to Nucleotide Sequence:NM_001394286.1Link to Protein Sequence:NP_001381215.1Re-query CCDS DB by Nucleotide ID:NM_001394286Re-query CCDS DB by Protein ID:NP_001381215Link to BLAST:NP_001381215.1

Chromosomal Locations for CCDS 93418.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159764461 159765138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159866163 159866281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159886207 159886324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159887708 159887905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159888820 159888943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159892097 159892190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159896723 159896774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCA
AAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCT
GGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGAC
GGGGAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTACCGGGATGACCGCTCTCCGGCCCGGG
AACCGGGGGACGTAAGCGCCAGGACCCGCAGCGGCGGCGGCGGGGGCAGGAGCGCCACCACCGCCATGCC
GCCCCCGGTGCCCAACGGCAACCTCCACCAGCACGACCCCCAGGACCTCAGGCACAATGGCAACGTGGTG
GTGGCTGGCCGGCCGAGCTGTTCCCGGGGCCCCCGCCGGGCGATCCAAAAGCCCCAGCCGGCTGGGGGCC
GGCGCAGTGGCCGCGGCCCGGCGGCTGGGGGGCTCTGCCTTCAGCCCCCAGACGGCGGGACGTGCGTCCC
CGAAGAGCCCCCGGTGCCACCTATGGATTGGGAGGCGCTGGAGAAGCATCTGGCCGGGCTGCAGTTCCGG
GAGCAGGAGGTACGGAACCAGGGCCAGGCGAGGACCAACTCCACCTCCGCACAGAAAAATGAGAGAGAGT
CTATCAGACAGAAGTTGGCACTTGGAAGCTTCTTTGATGATGGCCCAGGAATTTATACCAGCTGTAGCAA
AAGTGGGAAGCCAAGCCTTTCCTCCCGACTGCAGAGTGGGATGAACTTGCAGATATGCTTTGTCAACGAC
AGTGGCAGTGATAAGGACAGTGATGCTGATGACAGTAAGACTGAAACCAGCTTGGACACCCCCTTGTCTC
CCATGAGCAAACAGAGTTCTTCCTATTCTGATAGAGACACTACTGAAGAGGAGTCTGAATCCTTGGATGA
CATGGACTTCCTTACAAGGCAAAAGAAATTGCAAGCTGAAGCCAAAATGGCCCTTGCCATGGCCAAACCA
ATGGCCAAAATGCAAGTAGAAGTGGAGAAACAGAACAGGAAAAAGTCTCCCGTCGCTGATCTTCTGCCAC
ACATGCCTCATATAAGTGAATGCTTGATGAAAAGAAGTTTAAAACCCACCGACCTGAGAGACATGACTAT
TGGGCAGCTACAAGTGATAGTCAATGATCTCCATTCCCAGATAGAAAGCTTGAATGAAGAGTTGGTCCAG
CTGCTTCTCATCCGAGATGAGCTGCACACAGAGCAGGATGCCATGCTGGTGGACATTGAAGACTTGACCA
GACATGCTGAAAGTCAGCAGAAGCACATGGCAGAGAAAATGCCTGCAAAGTGA

Translation (460 aa):
MDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEED
GEEEEEEDERDQRGYRDDRSPAREPGDVSARTRSGGGGGRSATTAMPPPVPNGNLHQHDPQDLRHNGNVV
VAGRPSCSRGPRRAIQKPQPAGGRRSGRGPAAGGLCLQPPDGGTCVPEEPPVPPMDWEALEKHLAGLQFR
EQEVRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVND
SGSDKDSDADDSKTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKP
MAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLHSQIESLNEELVQ
LLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH