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Report for CCDS93486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93486.1 Public Homo sapiens 4 LCORL 24 110 108 CCDS HistoryNCBI Gene:254251Re-query CCDS DB by CCDS ID:93486.1Re-query CCDS DB by GeneID:254251See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000674942.1 ENSP00000502833.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674942.1Link to Ensembl Protein Viewer:ENSP00000502833.1Re-query CCDS DB by Nucleotide ID:ENST00000674942Re-query CCDS DB by Protein ID:ENSP00000502833
Original member Current member NCBI NM_001365661.1 NP_001352590.1 Accepted alive Link to Nucleotide Sequence:NM_001365661.1Link to Protein Sequence:NP_001352590.1Re-query CCDS DB by Nucleotide ID:NM_001365661Re-query CCDS DB by Protein ID:NP_001352590Link to BLAST:NP_001352590.1

Chromosomal Locations for CCDS 93486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17893429 17893583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17909094 17909345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17961903 17962032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17962970 17963049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17972820 17972885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 18021598 18021751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGACAAGGGAAGAGAGAGAATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCTCAGT
GCCGGAGCCCTCGGTGCGCGGCGGAGAGAAGAGGATTCCGGCGGGAACTCGACTCTTGGCGCCACCGCCT
CATGCACTGTGTAGGTTTTGAGAGTATTTTAGAAGGGCTTTATGGACCACGGCTACGAAGAGACCTCAGT
TTATTTGAAGACTGTGAACCAGAAGAGCTGACTGACTGGTCTATGGATGAAAAATGTTCATTTTGTAACC
TACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTGATTCTTCACAGTCAACACCAACAGAGGAGCT
ATCATCTCAGGGCCAGTCCAACACTGATAAGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTT
CGAAAGAAAGATCTTCCTCAGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGA
TGATACGTCAATTTGCGATTGAGTACATTTCAAAAAGTGGTAAAACTCAAGAGAATAGAAATGGTTCAAT
TGGACCAAGTATAGTATGTAAAAGTATCCAAATGAATCAAGCAGAAAACTCCCTTCAGGAAGAGCAGGAA
GGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGCAAGAGCTATCTGCAGGTGCTC
CTGTGTTCAGTCCTTCCAAACCATTTTCTGAAGAATATCTACCTGTGCACAAAACACACTCGCAGTGCTC
AGCCCCACTGACCTACCACATGAGATATATATCCTCTGTAAACTGTTTGCATAATTTATATTTTTGA

Translation (278 aa):
MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLS
LFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALF
RKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQE
GPLDLTVNRMQEQNTQQELSAGAPVFSPSKPFSEEYLPVHKTHSQCSAPLTYHMRYISSVNCLHNLYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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