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Report for CCDS93492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93492.1 Public Homo sapiens 4 RBM47 24 110 108 CCDS HistoryNCBI Gene:54502Re-query CCDS DB by CCDS ID:93492.1Re-query CCDS DB by GeneID:54502See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514014.1 ENSP00000423243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514014.1Link to Ensembl Protein Viewer:ENSP00000423243.1Re-query CCDS DB by Nucleotide ID:ENST00000514014Re-query CCDS DB by Protein ID:ENSP00000423243
Original member Current member NCBI NM_001371114.1 NP_001358043.1 Accepted alive Link to Nucleotide Sequence:NM_001371114.1Link to Protein Sequence:NP_001358043.1Re-query CCDS DB by Nucleotide ID:NM_001371114Re-query CCDS DB by Protein ID:NP_001358043Link to BLAST:NP_001358043.1

Chromosomal Locations for CCDS 93492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40425904 40426143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40432651 40432862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40436441 40436647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40437771 40438779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGAGCGCACGGGCTACAGCATGGTGCAAGAGAACGGGCAGCGCAAGTACGGCGGCCCACCGCCCGGCT
GGGAGGGCCCGCACCCGCAGCGTGGCTGCGAGGTCTTCGTGGGCAAGATCCCGCGCGACGTGTACGAGGA
CGAGCTGGTGCCCGTGTTCGAGGCCGTGGGCCGCATCTACGAGCTGCGCCTCATGATGGACTTTGACGGC
AAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGCACGAGGCCAAGCGCGCAGTGCGTGAGCTCA
ACAACTACGAGATCCGCCCGGGCCGCCTGCTCGGCGTGTGCTGCAGCGTGGACAACTGCCGCCTCTTCAT
CGGCGGGATCCCCAAGATGAAGAAGCGCGAGGAAATCCTGGAGGAGATTGCCAAGGTCACCGAGGGCGTG
CTGGACGTGATCGTCTACGCCAGCGCGGCCGACAAGATGAAGAACCGCGGCTTCGCCTTCGTGGAGTACG
AGAGCCACCGCGCGGCTGCCATGGCTCGCCGCAAGCTCATGCCTGGCCGCATCCAGCTGTGGGGCCACCA
GATCGCCGTGGACTGGGCCGAACCTGAGATCGACGTGGACGAGGACGTGATGGAGACCGTGAAGATCCTC
TACGTGCGCAACCTCATGATCGAGACCACCGAGGACACCATCAAGAAGAGCTTCGGCCAGTTCAACCCCG
GCTGCGTGGAGCGCGTCAAGAAGATCCGCGACTACGCCTTCGTGCACTTCACCAGCCGCGAGGATGCCGT
GCATGCCATGAACAACCTCAACGGCACTGAGCTGGAGGGCTCGTGCCTGGAGGTCACGCTGGCCAAGCCC
GTGGACAAGGAGCAGTACTCGCGCTACCAGAAGGCAGCCAGGGGCGGCGGCGCGGCTGAGGCAGCGCAGC
AGCCCAGCTACGTGTACTCCTGCGACCCCTACACACTGGCCTACTACGGCTACCCCTACAACGCGCTCAT
TGGGCCCAACAGGGACTACTTTGTGAAAGCAGGCAGCATAAGAGGCCGAGGGCGAGGTGCAGCTGGCAAC
AGAGCCCCAGGGCCTAGGGGTTCCTACCTCGGGGGATATTCTGCTGGTCGTGGTATATATAGCCGATATC
ATGAAGGGAAAGGAAAGCAGCAAGAAAAAGGATATGAACTGGTGCCGAATTTGGAAATCCCTACCGTCAA
CCCAGTTGCCATTAAACCTGGTACAGTAGCCATCCCTGCCATTGGGGCTCAGTATTCCATGTTTCCAGCA
GCTCCAGCCCCTAAAATGATTGAAGATGGCAAAATCCACACAGTGGAGCACATGATCAGCCCCATTGCTG
TGCAGCCAGACCCAGCCAGTGCTGCTGCCGCCGCAGCCGCGGCCGCAGCCGCCGCAGCCGCTGTCATTCC
CACTGTGTCGACGCCACCACCTTTCCAGGGCCGCCCAATAACTCCAGTATACACGGTGGCTCCAAACGTT
CAGAGAATTCCTACTGCCGGGATCTACGGGGCCAGTTACGTGCCATTTGCTGCTCCAGCTACAGCCACGA
TCGCCACACTACAGAAGAACGCGGCAGCCGCGGCCGCCATGTATGGAGGATACGCAGGCTACATACCTCA
GGCCTTCCCTGCTGCTGCCATTCAGGTCCCCATCCCCGACGTCTACCAGACATACTGA

Translation (555 aa):
MERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDG
KNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGV
LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL
YVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP
VDKEQYSRYQKAARGGGAAEAAQQPSYVYSCDPYTLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGN
RAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPA
APAPKMIEDGKIHTVEHMISPIAVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNV
QRIPTAGIYGASYVPFAAPATATIATLQKNAAAAAAMYGGYAGYIPQAFPAAAIQVPIPDVYQTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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