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Report for CCDS9355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9355.1 Public Homo sapiens 13 SOHLH2 24 110 108 CCDS HistoryNCBI Gene:54937Re-query CCDS DB by CCDS ID:9355.1Re-query CCDS DB by GeneID:54937See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9355.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379881.8 ENSP00000369210.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379881.8Link to Ensembl Protein Viewer:ENSP00000369210.3Re-query CCDS DB by Nucleotide ID:ENST00000379881Re-query CCDS DB by Protein ID:ENSP00000369210
Original member Current member NCBI NM_017826.3 NP_060296.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017826.3Link to Protein Sequence:NP_060296.2Re-query CCDS DB by Nucleotide ID:NM_017826Re-query CCDS DB by Protein ID:NP_060296Link to BLAST:NP_060296.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060296.2 425 Q9NX45-1 425 100% 0 0

Chromosomal Locations for CCDS 9355.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36169034 36169054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36170531 36170787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36173692 36173810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36174476 36174567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36174722 36174869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36189946 36190056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36191795 36191894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36193621 36193725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36193806 36193867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36201879 36202093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36214479 36214526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCTTCCTCAATTATCTGCCAGGAGCACTGCCAGATCTCGGGCCAGGCAAAAATAGACATCTTATTAG
TTGGAGATGTCACTGTGGGCTACCTGGCTGATACTGTACAGAAACTATTTGCAAACATAGCAGAAGTCAC
CATCACCATCAGTGACACGAAGGAGGCAGCAGCGCTTTTGGATGATTGCATATTCAACATGGTTCTCTTG
AAGGTGCCTTCTTCACTAAGTGCCGAGGAGCTGGAAGCCATCAAGTTAATTAGATTTGGCAAAAAGAAAA
ATACACATTCACTGTTTGTTTTTATAATCCCTGAAAATTTTAAAGGTTGTATTTCAGGGCATGGAATGGA
TATTGCTTTAACTGAACCACTGACAATGGAAAAAATGAGTAATGTGGTAAAATACTGGACAACATGTCCC
TCAAACACTGTTAAGACTGAAAACGCAACTGGGCCTGAAGAACTTGGATTGCCCCTGCAGAGGTCCTACA
GCGAACACCTGGGATATTTTCCTACTGATCTATTTGCCTGCTCTGAATCTTTAAGGAATGGCAATGGGCT
TGAATTAAATGCTTCGTTGTCAGAGTTCGAGAAAAACAAAAAGATCTCTCTTCTTCATTCAAGCAAGGAA
AAACTAAGAAGGGAAAGAATCAAATATTGCTGTGAGCAGCTGCGTACTCTCTTGCCGTATGTAAAAGGGA
GAAAGAATGATGCGGCTTCAGTTCTTGAGGCAACAGTTGATTATGTGAAATATATCCGGGAGAAAATCTC
TCCAGCCGTTATGGCCCAGATTACAGAAGCACTTCAGAGCAACATGAGGTTTTGTAAGAAACAACAAACA
CCCATTGAGCTGTCTCTCCCAGGCACTGTCATGGCACAGCGGGAAAACAGTGTGATGAGCACTTACTCCC
CTGAGAGAGGGCTCCAATTCCTGACTAATACGTGCTGGAATGGGTGCTCCACTCCTGATGCAGAGAGCTC
CTTGGATGAAGCTGTGAGAGTTCCATCAAGCTCCGCCTCAGAGAATGCTATTGGTGATCCATATAAAACT
CACATTTCCAGTGCAGCGCTGTCTCTGAATTCCTTGCATACTGTCAGATATTATTCTAAAGTCACCCCTT
CCTACGATGCAACTGCTGTAACAAATCAGAACATTTCAATTCATTTACCTTCAGCCATGCCCCCGGTCTC
AAAGCTTCTCCCTCGGCACTGCACTTCTGGGTTGGGCCAGACGTGCACTACACATCCCAACTGTCTGCAA
CAGTTTTGGGCGTATTAA

Translation (425 aa):
MASSIICQEHCQISGQAKIDILLVGDVTVGYLADTVQKLFANIAEVTITISDTKEAAALLDDCIFNMVLL
KVPSSLSAEELEAIKLIRFGKKKNTHSLFVFIIPENFKGCISGHGMDIALTEPLTMEKMSNVVKYWTTCP
SNTVKTENATGPEELGLPLQRSYSEHLGYFPTDLFACSESLRNGNGLELNASLSEFEKNKKISLLHSSKE
KLRRERIKYCCEQLRTLLPYVKGRKNDAASVLEATVDYVKYIREKISPAVMAQITEALQSNMRFCKKQQT
PIELSLPGTVMAQRENSVMSTYSPERGLQFLTNTCWNGCSTPDAESSLDEAVRVPSSSASENAIGDPYKT
HISSAALSLNSLHTVRYYSKVTPSYDATAVTNQNISIHLPSAMPPVSKLLPRHCTSGLGQTCTTHPNCLQ
QFWAY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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