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Report for CCDS93569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93569.1 Public Homo sapiens 4 LARP7 24 110 108 CCDS HistoryNCBI Gene:51574Re-query CCDS DB by CCDS ID:93569.1Re-query CCDS DB by GeneID:51574See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511529.2 ENSP00000426376.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511529.2Link to Ensembl Protein Viewer:ENSP00000426376.2Re-query CCDS DB by Nucleotide ID:ENST00000511529Re-query CCDS DB by Protein ID:ENSP00000426376
Original member Current member NCBI NM_001370976.1 NP_001357905.1 Accepted alive Link to Nucleotide Sequence:NM_001370976.1Link to Protein Sequence:NP_001357905.1Re-query CCDS DB by Nucleotide ID:NM_001370976Re-query CCDS DB by Protein ID:NP_001357905Link to BLAST:NP_001357905.1
Original member Current member NCBI NM_001370977.1 NP_001357906.1 Accepted alive Link to Nucleotide Sequence:NM_001370977.1Link to Protein Sequence:NP_001357906.1Re-query CCDS DB by Nucleotide ID:NM_001370977Re-query CCDS DB by Protein ID:NP_001357906Link to BLAST:NP_001357906.1

Chromosomal Locations for CCDS 93569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112644670 112644871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646351 112646451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646588 112646671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646791 112646955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647034 112647127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647202 112647549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647651 112647834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112649535 112649686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112650461 112650582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112653077 112653236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112654068 112654159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112657247 112657327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGAAACTGAAAGTGGAAATCAGGAAAAGGTAATGGAAGAAGAAAGCACTGAAAAGAAAAAAGAAGTTG
AAAAAAAGAAACGGTCACGAGTTAAACAGGTGCTTGCAGATATTGCTAAGCAAGTGGACTTCTGGTTTGG
GGATGCAAATCTTCACAAGGATAGATTTCTTCGAGAACAGATAGAAAAATCTAGAGATGGATATGTTGAT
ATATCACTACTTGTGTCTTTTAACAAAATGAAAAAATTGACTACTGATGGGAAGTTAATTGCCAGAGCAT
TGAGAAGTTCAGCTGTTGTAGAGCTTGATTTGGAAGGCACCAGAATCCGGAGGAAAAAACCTCTGGGGGA
AAGACCAAAGGATGAGGATGAACGCACAGTGTATGTGGAGTTACTTCCCAAAAATGTTAATCACAGCTGG
ATTGAAAGAGTATTTGGGAAATGTGGCAATGTTGTTTATATAAGTATACCACATTATAAGTCTACTGGAG
ATCCAAAGGGATTTGCGTTTGTGGAATTTGAAACAAAAGAACAAGCAGCAAAAGCAATTGAGTTTCTTAA
CAACCCACCAGAAGAAGCACCAAGAAAACCTGGCATATTTCCTAAAACAGTGAAAAATAAGCCCATTCCA
GCCTTAAGAGTTGTGGAGAAGAAAAAGAAAAAGAAGAAGAAAGGCCGAATGAAAAAGGAAGACAATATCC
AAGCCAAAGAAGAAAACATGGACACAAGCAACACCAGCATCAGTAAAATGAAAAGATCCAGACCCACATC
TGAGGGCTCTGACATTGAGTCCACTGAACCCCAAAAGCAGTGCTCAAAGAAAAAGAAAAAACGGGACAGA
GTTGAAGCATCTAGCTTACCTGAAGTCAGAACAGGGAAGAGGAAGAGAAGCAGCTCTGAAGATGCAGAAT
CCCTAGCTCCCCGATCAAAAGTAAAGAAAATTATTCAGAAAGACATCATTAAGGAAGCATCAGAAGCTTC
CAAGGAAAATAGAGCCCCATGTCTTAACGGAGAGCTTTTTTATTTATTTCAAGATATAGAAATCTCTACT
GAAGAGGAAAAGGATACTGGAGATCTAAAAGATAGCTCTCTCTTGAAAACAAAAAGGAAACATAAGAAAA
AACATAAAGAGAGACATAAAATGGGAGAAGAAGTTATACCATTAAGAGTGCTATCAAAGAGCGAATGGAT
GGATTTGAAAAAAGAGTATTTAGCGCTACAAAAAGCTAGCATGGCTTCTTTAAAAAAAACAATATCCCAA
ATAAAATCAGAGTCAGAAATGGAAACAGACAGTGGAGTACCTCAAAACACTGGAATGAAAAATGAAAAAA
CAGCCAACAGGGAAGAGTGTCGCACCCAGGAGAAAGTTAATGCAACAGGACCACAGTTCGTGAGTGGAGT
GATTGTGAAGATCATTAGCACAGAGCCTCTACCTGGCAGGAAACAAGTCCGGGATACTTTGGCAGCAATC
TCAGAAGTTCTTTATGTTGATTTGCTAGAAGGGGATACAGAATGCCATGCTAGATTTAAAACTCCTGAGG
ATGCTCAAGCAGTAATAAATGCCTATACAGAAATTAACAAGAAACACTGCTGGAAACTCGAGATCCTTTC
TGGTGATCACGAACAAAGGTATTGGCAGAAGATTTTGGTTGATAGACAGGCAAAACTTAATCAGCCTCGG
GAAAAGAAAAGAGGCACTGAAAAGTTAATCACCAAAGCTGAAAAGATTAGACTGGCAAAGACTCAACAAG
CGAGTAAACATATAAGATTTTCTGAATATGATTGA

Translation (594 aa):
METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVD
ISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSW
IERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIP
ALRVVEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDR
VEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRAPCLNGELFYLFQDIEIST
EEEKDTGDLKDSSLLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLKKTISQ
IKSESEMETDSGVPQNTGMKNEKTANREECRTQEKVNATGPQFVSGVIVKIISTEPLPGRKQVRDTLAAI
SEVLYVDLLEGDTECHARFKTPEDAQAVINAYTEINKKHCWKLEILSGDHEQRYWQKILVDRQAKLNQPR
EKKRGTEKLITKAEKIRLAKTQQASKHIRFSEYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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