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Report for CCDS93675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93675.1 Public Homo sapiens 4 SNX25 24 110 108 CCDS HistoryNCBI Gene:83891Re-query CCDS DB by CCDS ID:93675.1Re-query CCDS DB by GeneID:83891See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652585.2 ENSP00000498676.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652585.2Link to Ensembl Protein Viewer:ENSP00000498676.1Re-query CCDS DB by Nucleotide ID:ENST00000652585Re-query CCDS DB by Protein ID:ENSP00000498676
Original member Current member NCBI NM_001378034.2 NP_001364963.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378034.2Link to Protein Sequence:NP_001364963.1Re-query CCDS DB by Nucleotide ID:NM_001378034Re-query CCDS DB by Protein ID:NP_001364963Link to BLAST:NP_001364963.1

Chromosomal Locations for CCDS 93675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185209827 185210255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185247294 185247378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185258848 185259064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185264438 185264610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185266969 185267155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185288012 185288082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185310635 185310816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185320733 185320864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185323528 185323800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185332595 185332759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185339379 185339510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185341976 185342116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185346537 185346650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185351445 185351609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185353485 185353602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185357671 185357737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185361924 185362105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185362611 185362711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185363385 185363465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGCACCCCGATGCGACCGACAGTGGCGGCGCCGGCCCCAGCCCCGCGCGGGCCGCAGGCGCCGGCGGCC
GTCCTGTCTCGGGCTTCAGGGGCGAGCGGCGGCCGGAGTCCCCGGGGGACGCGGAGGCAGCAGCAGCGGC
GGCGCCGGGGGCCCCGGGCGGCCGGAGCTGGTGGAAGCCCGTGGCGGTGGCCGCACTCGCCGCCGTGGCC
CTCTCCTTCCTGGGGCCCGGCAGCGGGGAGGCGGCGGGGGCCGCGGGGCTGAGCTCCGTCCTGTTCAGGC
TCAGCCTGTACCTGAGCTGCGCGGCGGCCGCCTTCCTGCTGGGGATCCTGTTTGCCCTCGTCTGCCGGAG
CCCGCGCGCCCAGCCGCCCGACTTCGCCGCCGCCTGGAGCCGGCTGGCCGCGACCTCAGCCGCCCGCCGC
CCGCCGGGGAGTCCTGTGTATGGAAACTCACATGAGTCAGCTCAGTCTAGAAGGGTAGTAATTTCTCATA
ATATGGATAAAGCTCTGAAAGAAGTGTTCGACTACAGTTATAGAGATTACATTCTGTCCTGGTATGGAAA
CCTCAGCAGAGATGAGGGACAACTTTACCATCTGCTCTTGGAAGACTTTTGGGAAATTGCCAGACAGCTG
CACCACAGACTGAGTCACGTGGATGTGGTTAAAGTTGTCTGCAATGATGTTGTGAGGACTTTACTCACTC
ATTTCTGTGACCTGAAAGCTGCCAATGCCAGACATGAAGAACAGCCAAGACCTTTTGTGTTGCACGCATG
CTTGAGGAACTCAGATGATGAAGTAAGATTTCTACAAACGTGTTCTCGGGTTCTGGTGTTTTGTCTCCTC
CCCTCAAAGGATGTGCAGTCTCTCAGCTTACGTATAATGCTTGCAGAAATTCTCACAACAAAAGTCTTGA
AGCCGGTAGTGGAGTTACTGAGTAATCCAGATTACATTAACCAAATGCTGCTTGCCCAGCTGGCGTACAG
AGAGCAAATGAATGAGCATCACAAGAGAGCCTACACCTATGCCCCCTCTTACGAGGACTTCATCAAGCTC
ATTAACAGCAACTCTGATGTGGAGTTCTTGAAGCAACTAAGGTATCAAATTGTAGTGGAAATAATCCAGG
CGACTACAATTAGCAGCTTTCCCCAACTGAAGAGGCACAAAGGTAAAGAAACTGCGGCAATGAAAGCTGA
TCTCCTGAGGGCCAGGAACATGAAGAGGTACATCAACCAACTGACTGTGGCAAAGAAGCAGTGTGAGAAG
AGAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAGGATGGGGCCCTGGATGAGGGGGAAGGGC
CTCAAAGCCAGAAGATTCTTCAGTTTGAAGATATCTTGGCCAATACGTTCTACCGAGAGCACTTTGGAAT
GTACATGGAAAGGATGGACAAAAGAGCTCTGATTAGTTTTTGGGAATCTGTGGAACATTTAAAGAATGCT
AACAAGAATGAAATTCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAGAAATAT
CTGTGGAAAAATCACTTTACAAAGAAATTCAGCAGTGTCTTGTAGGAAATAAAGGTATTGAAGTATTCTA
CAAAATCCAGGAAGATGTTTATGAGACCCTAAAGGATAGGTATTACCCTTCATTTATTGTCAGTGACCTG
TATGAGAAATTGTTGATAAAAGAGGAAGAAAAACATGCCTCACAGATGATTTCCAACAAGGATGAGATGG
GCCCAAGAGATGAGGCTGGTGAGGAAGCCGTGGATGATGGTACCAATCAGATCAATGAACAAGCCAGTTT
TGCTGTAAACAAACTGCGAGAACTAAATGAGAAACTTGAATATAAAAGGCAAGCTCTAAATTCTATTCAA
AATGCACCAAAACCTGACAAGAAGATTGTTTCCAAGTTGAAGGATGAAATAATCCTAATAGAGAAAGAAC
GCACAGACCTTCAGCTGCACATGGCAAGAACGGATTGGTGGTGTGAAAACCTTGGCATGTGGAAAGCCTC
CATCACCAGTGGAGAGGTTACAGAAGAGAATGGTGAGCAATTGCCATGTTACTTTGTCATGGTAAGCCTA
CAAGAAGTTGGAGGAGTTGAAACTAAGAACTGGACGGTCCCCAGAAGGCTCAGCGAGTTTCAGAATTTAC
ACCGGAAACTCAGTGAGTGCGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTCTTAGCAAGCTGCCTTT
CAAATCTATAGATCAAAAGTTTATGGAAAAGTCGAAGAATCAATTAAATAAGTTTTTACAGAATCTGCTT
TCAGATGAAAGACTGTGTCAGAGTGAAGCACTTTATGCCTTCTTGAGCCCTTCTCCTGACTACCTCAAGG
TTATCGACGTGCAGGGGAAAAAAAATTCTTTTTCATTATCCTCATTTTTGGAAAGACTTCCTCGCGACTT
CTTCTCCCACCAGGAGGAGGAGACAGAGGAGGACAGTGACCTGTCAGATTATGGTGATGATGTGGATGGG
AGGAAAGACGCCTTGGCTGAACCATGTTTCATGTTGATTGGGGAGATTTTTGAACTTCGAGGAATGTTTA
AATGGGTGAGAAGAACATTAATTGCCCTCGTTCAGGTCACTTTTGGAAGAACCATCAACAAACAAATCCG
GGACACAGTCAGCTGGATTTTCAGTGAGCAAATGTTGGTTTACTACATCAATATTTTCCGGGATGCTTTT
TGGCCAAATGGGAAGTTGGCACCACCGACCACAATCAGAAGCAAAGAGCAAAGTCAGGAAACAAAACAGA
GAGCACAGCAAAAGCTGCTTGAAAACATTCCAGATATGCTTCAGAGCCTTGTTGGACAGCAAAATGCCCG
CCACGGTATAATAAAAATATTCAATGCACTGCAAGAAACAAGAGCCAACAAGCATCTGTTATATGCGCTG
ATGGAACTGCTGCTAATTGAACTGTGTCCTGAGCTGAGAGTTCATTTAGATCAACTTAAAGCTGGCCAAG
TTTGA

Translation (1004 aa):
MHPDATDSGGAGPSPARAAGAGGRPVSGFRGERRPESPGDAEAAAAAAPGAPGGRSWWKPVAVAALAAVA
LSFLGPGSGEAAGAAGLSSVLFRLSLYLSCAAAAFLLGILFALVCRSPRAQPPDFAAAWSRLAATSAARR
PPGSPVYGNSHESAQSRRVVISHNMDKALKEVFDYSYRDYILSWYGNLSRDEGQLYHLLLEDFWEIARQL
HHRLSHVDVVKVVCNDVVRTLLTHFCDLKAANARHEEQPRPFVLHACLRNSDDEVRFLQTCSRVLVFCLL
PSKDVQSLSLRIMLAEILTTKVLKPVVELLSNPDYINQMLLAQLAYREQMNEHHKRAYTYAPSYEDFIKL
INSNSDVEFLKQLRYQIVVEIIQATTISSFPQLKRHKGKETAAMKADLLRARNMKRYINQLTVAKKQCEK
RIRILGGPAYDQQEDGALDEGEGPQSQKILQFEDILANTFYREHFGMYMERMDKRALISFWESVEHLKNA
NKNEIPQLVGEIYQNFFVESKEISVEKSLYKEIQQCLVGNKGIEVFYKIQEDVYETLKDRYYPSFIVSDL
YEKLLIKEEEKHASQMISNKDEMGPRDEAGEEAVDDGTNQINEQASFAVNKLRELNEKLEYKRQALNSIQ
NAPKPDKKIVSKLKDEIILIEKERTDLQLHMARTDWWCENLGMWKASITSGEVTEENGEQLPCYFVMVSL
QEVGGVETKNWTVPRRLSEFQNLHRKLSECVPSLKKVQLPSLSKLPFKSIDQKFMEKSKNQLNKFLQNLL
SDERLCQSEALYAFLSPSPDYLKVIDVQGKKNSFSLSSFLERLPRDFFSHQEEETEEDSDLSDYGDDVDG
RKDALAEPCFMLIGEIFELRGMFKWVRRTLIALVQVTFGRTINKQIRDTVSWIFSEQMLVYYINIFRDAF
WPNGKLAPPTTIRSKEQSQETKQRAQQKLLENIPDMLQSLVGQQNARHGIIKIFNALQETRANKHLLYAL
MELLLIELCPELRVHLDQLKAGQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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