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Report for CCDS93715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93715.1 Public Homo sapiens 5 ERCC8 24 110 108 CCDS HistoryNCBI Gene:1161Re-query CCDS DB by CCDS ID:93715.1Re-query CCDS DB by GeneID:1161See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93715.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647486.2 ENSP00000494466.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647486.2Link to Ensembl Protein Viewer:ENSP00000494466.2Re-query CCDS DB by Nucleotide ID:ENST00000647486Re-query CCDS DB by Protein ID:ENSP00000494466
Original member Current member EBI ENST00000675229.1 ENSP00000502154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675229.1Link to Ensembl Protein Viewer:ENSP00000502154.1Re-query CCDS DB by Nucleotide ID:ENST00000675229Re-query CCDS DB by Protein ID:ENSP00000502154
Original member Current member NCBI NM_001007234.3 NP_001007235.1 Accepted alive Link to Nucleotide Sequence:NM_001007234.3Link to Protein Sequence:NP_001007235.1Re-query CCDS DB by Nucleotide ID:NM_001007234Re-query CCDS DB by Protein ID:NP_001007235Link to BLAST:NP_001007235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007235.1 205 Q13216-2 205 100% 0 0

Chromosomal Locations for CCDS 93715.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 60903580 60903716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60904792 60904873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60918265 60918388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60922054 60922155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60928864 60928959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60944932 60945008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGCTGGGGTTTTTGTCCGCACGCCAAACGGGTTTGGAGGACCCTCTTCGCCTTCGGAGAGCAGAGTCAA
CACGGAGAGTTTTGGGACTGGAATTAAATAAAGACAGAGATGTTGAAAGAATCCACGGCGGTGGAATTAA
CACCCTTGACATTGAACCTGTTGAAGGGAGATACATGTTATCAGGTGGTTCAGATGGTGTGATTGTACTT
TATGACCTTGAGAACTCCAGCAGACAATCTTATTACACATGTAAAGCAGTGTGTTCCATTGGCAGAGATC
ATCCTGATGTTCACAGATACAGTGTGGAGACTGTACAGTGGTATCCTCATGACACTGGCATGTTCACATC
AAGCTCATTTGATAAAACTCTGAAAGTATGGGATACAAATACATTACAAACTGCAGATGTATTTAATTTT
GAGGAAACAGTTTATAGTCATCATATGTCTCCAGTCTCCACCAAGCACTGTTTGGTAGCAGTTGGTACTA
GAGGACCCAAAGTACAACTTTGTGACTTGAAGTCTGGATCCTGTTCTCACATTCTACAGGGTATTTTTAT
TTTATTTCAAACGGCAACTACTTTGAGTAAACGATTCAATAAAAAGAAACGTTACTAA

Translation (205 aa):
MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVL
YDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF
EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGIFILFQTATTLSKRFNKKKRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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