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Report for CCDS93768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93768.1 Public Homo sapiens 5 ZNF475 24 110 108 CCDS HistoryNCBI Gene:100505841Re-query CCDS DB by CCDS ID:93768.1Re-query CCDS DB by GeneID:100505841See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93768.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509403.7 ENSP00000489710.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509403.7Link to Ensembl Protein Viewer:ENSP00000489710.1Re-query CCDS DB by Nucleotide ID:ENST00000509403Re-query CCDS DB by Protein ID:ENSP00000489710
Original member Current member NCBI NM_001195535.4 NP_001182464.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195535.4Link to Protein Sequence:NP_001182464.2Re-query CCDS DB by Nucleotide ID:NM_001195535Re-query CCDS DB by Protein ID:NP_001182464Link to BLAST:NP_001182464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182464.2 108 A0A1B0GTH9 108 100% 0 0

Chromosomal Locations for CCDS 93768.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122179556 122179730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122182491 122182642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGATACGGCGTCCACCAGCAGTTGTTTGCTACATTTGTGGTCGTGAATATGGAACAAAATCTATTAGCA
TTCATGAGCCACAATGTCTGAAAAAATGGCATAATGAAAACAACTTGTTGCCTAAAGAGTTAAGGAGACC
AGTACCTAAAAAACCAGAAGTCAGGACCATTACTGCCAAAGGCTTCTATGATCTTGATGCTTTAAATGAA
GCTGCTTGGACAAGTGCCCACAGCCAGTTGGTTCCCTGTAATGTTTGTGGGCGTACCTTCCTGCCAGACA
GACTGATTGTTCACCAACGATCTTGTAAACCCAAAGCCGCCAAGTAA

Translation (108 aa):
MIRRPPAVVCYICGREYGTKSISIHEPQCLKKWHNENNLLPKELRRPVPKKPEVRTITAKGFYDLDALNE
AAWTSAHSQLVPCNVCGRTFLPDRLIVHQRSCKPKAAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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