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Report for CCDS93860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93860.1 Public Homo sapiens 6 PHACTR1 24 110 108 CCDS HistoryNCBI Gene:221692Re-query CCDS DB by CCDS ID:93860.1Re-query CCDS DB by GeneID:221692See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000482982.2 ENSP00000501726.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482982.2Link to Ensembl Protein Viewer:ENSP00000501726.1Re-query CCDS DB by Nucleotide ID:ENST00000482982Re-query CCDS DB by Protein ID:ENSP00000501726
Original member Current member EBI ENST00000676234.1 ENSP00000502037.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676234.1Link to Ensembl Protein Viewer:ENSP00000502037.1Re-query CCDS DB by Nucleotide ID:ENST00000676234Re-query CCDS DB by Protein ID:ENSP00000502037
Original member Current member EBI ENST00000692995.1 ENSP00000509690.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692995.1Link to Ensembl Protein Viewer:ENSP00000509690.1Re-query CCDS DB by Nucleotide ID:ENST00000692995Re-query CCDS DB by Protein ID:ENSP00000509690
Original member Current member NCBI NM_001322311.2 NP_001309240.1 Accepted alive Link to Nucleotide Sequence:NM_001322311.2Link to Protein Sequence:NP_001309240.1Re-query CCDS DB by Nucleotide ID:NM_001322311Re-query CCDS DB by Protein ID:NP_001309240Link to BLAST:NP_001309240.1
Original member Current member NCBI NM_001322312.3 NP_001309241.1 Accepted alive Link to Nucleotide Sequence:NM_001322312.3Link to Protein Sequence:NP_001309241.1Re-query CCDS DB by Nucleotide ID:NM_001322312Re-query CCDS DB by Protein ID:NP_001309241Link to BLAST:NP_001309241.1

Chromosomal Locations for CCDS 93860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13053391 13053529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13160204 13160284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13182519 13182686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13205815 13206136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13227816 13228063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13230037 13230193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13272860 13272915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13278268 13278329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13283422 13283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13286146 13286222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13287063 13287078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGCGTTCTGACTCCCTCGTCCCAGGCACCCACACCCCACCCATCCGCAGGAGAAGTAAGTTTGCCAACC
TGGGAAGGATTTTCAAGCCTTGGAAATGGAGGAAGAAGAAAAGCGAAAAGTTCAAACACACGTCAGCAGC
CCTGGAAAGGAAAATATCTATGAGGCAAAGCAGAGAAGAGCTGATAAAGCGAGGAGTCCTGAAGGAAATC
TATGATAAAGATGGGGAACTCTCTATATCCAATGAAGAGGACTCCCTAGAAAATGGGCAGTCCCTGAGCT
CCAGCCAGCTGTCTCTGCCTGCCCTGTCCGAAATGGAGCCAGTCCCAATGCCCAGGGATCCCTGCTCATA
TGAGGTGCTCCAACCGTCAGACATCATGGATGGGCCAGATCCTGGCGCCCCTGTGAAATTGCCTTGTCTG
CCAGTGAAACTGTCGCCTCCGCTACCTCCAAAGAAAGTCATGATCTGTATGCCCGTGGGGGGGCCAGACC
TCTCACTGGTGTCCTACACAGCCCAGAAGAGTGGCCAGCAGGGTGTGGCCCAGCACCACCACACTGTCCT
GCCCTCCCAGATCCAGCACCAGCTGCAGTACGGCAGCCACGGCCAGCACCTCCCCTCCACCACCGGCTCC
CTCCCCATGCACCCCTCGGGCTGCAGAATGATAGACGAGCTCAACAAAACGCTGGCCATGACCATGCAGA
GGCTGGAAAGCTCTGAGCAGCGGGTCCCCTGTTCCACTTCTTACCACAGCTCTGGGTTGCACTCGGGTGA
TGGGGTCACCAAAGCAGGACCTATGGGCCTTCCAGAAATAAGACAAGTGCCAACTGTTGTGATTGAATGT
GATGACAATAAAGAAAATGTGCCTCATGAGTCAGACTACGAAGACTCTTCTTGCCTGTATACAAGAGAAG
AGGAGGAAGAGGAGGAGGACGAAGACGACGACAGCTCATTATACACCAGCTCCCTGGCCATGAAGGTCTG
CAGGAAGGACTCCTTAGCCATCAAACTCAGCAACAGGCCCTCCAAGCGAGAGCTGGAAGAAAAGAACATC
CTTCCCAGGCAGACGGATGAGGAGCGGCTGGAGCTGAGGCAACAGATTGGCACCAAGCTCACCAGGCGGC
TGAGCCAGAGGCCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAACCTCGGAATGAACAAGAGGA
ACAGGAGGAGAAGAGAGAGATCAAGAGGAGGCTAACCCGAAAGCTCAGTCAAAGGCCCACGGTGGAAGAG
CTTCGGGAAAGAAAGATCCTCATCCGCTTCAGTGACTACGTGGAGGTGGCTGACGCTCAGGACTATGACC
GCAGGGCAGATAAGCCGTGGACCCGCCTCACCGCTGCAGACAAAGCTGCCATCCGAAAGGAGCTCAATGA
ATTCAAAAGCACTGAGATGGAAGTTCATGAATTGAGTAGACACTTAACAAGGTTTCACCGACCTTAA

Translation (488 aa):
MRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMRQSREELIKRGVLKEI
YDKDGELSISNEEDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGPDPGAPVKLPCL
PVKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGVAQHHHTVLPSQIQHQLQYGSHGQHLPSTTGS
LPMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSGDGVTKAGPMGLPEIRQVPTVVIEC
DDNKENVPHESDYEDSSCLYTREEEEEEEDEDDDSSLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNI
LPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRKLSQRPTVEE
LRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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