NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93954.1 Public Homo sapiens 6 PGM3 24 110 108 CCDS HistoryNCBI Gene:5238Re-query CCDS DB by CCDS ID:93954.1Re-query CCDS DB by GeneID:5238See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650642.1 ENSP00000498516.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650642.1Link to Ensembl Protein Viewer:ENSP00000498516.1Re-query CCDS DB by Nucleotide ID:ENST00000650642Re-query CCDS DB by Protein ID:ENSP00000498516
Original member Current member NCBI NM_001367286.1 NP_001354215.1 Accepted alive Link to Nucleotide Sequence:NM_001367286.1Link to Protein Sequence:NP_001354215.1Re-query CCDS DB by Nucleotide ID:NM_001367286Re-query CCDS DB by Protein ID:NP_001354215Link to BLAST:NP_001354215.1

Chromosomal Locations for CCDS 93954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83169234 83169323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83170305 83170478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83174374 83174487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83175962 83176060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83178673 83178756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83179810 83179967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83181736 83181931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83182845 83182978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83187008 83187075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83188614 83188798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83190809 83191012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGATTTAGGTGCTATTACAAAATACTCAGCATTACACGCCAAGCCCAATGGACTGATCCTTCAATACG
GGACTGCTGGATTTCGAACGAAGGCAGAACATCTTGATCATGTCATGTTTCGCATGGGATTATTAGCTGT
CCTGAGGTCAAAACAGACAAAATCCACTATAGGAGTCATGGTAACAGCGTCCCACAATCCTGAGGAAGAC
AATGGTGTAAAATTGGTTGATCCTTTGGGTGAAATGTTGGCACCATCCTGGGAGGAACATGCCACCTGTT
TAGCAAATGCTGAGGAACAAGATATGCAGAGAGTGCTTATTGACATCAGCGAGAAAGAAGCTGTGAATCT
GCAACAAGATGCCTTTGTAGTTATTGGTAGAGATACCAGGCCCAGCAGTGAGAAACTTTCACAATCTGTA
ATAGATGGTGTGACTGTTCTAGGAGGTCAATTCCATGATTATGGCTTGTTAACAACACCCCAGCTGCACT
ACATGGTGTATTGTCGAAACACGGGTGGCCGATATGGAAAGGCAACTATAGAAGGTTACTACCAGAAACT
CTCTAAGGCTTTTGTGGAACTCACCAAACAGGCTTCTTGCAGTGGAGATGAATACAGATCACTTAAGGTT
GACTGTGCAAATGGCATAGGGGCCCTGAAGCTAAGGGAAATGGAACACTACTTCTCACAGGGCCTGTCAG
TTCAGCTGTTTAATGATGGGTCCAAGGGCAAACTCAATCATTTATGTGGAGCTGACTTTGTGAAAAGTCA
TCAGAAACCTCCACAGGGAATGGAAATTAAGTCCAATGAAAGATGCTGTTCTTTTGATGGAGATGCAGAC
AGAATTGTTTATTACTACCATGATGCAGATGGCCACTTTCATCTCATAGATGGAGACAAGATAGCAACGT
TAATTAGCAGTTTCCTTAAAGAGCTCCTGGTGGAGATTGGAGAAAGTTTGAATATTGGTGTTGTACAAAC
TGCATATGCAAATGGAAGTTCAACACGGTATCTTGAAGAAGTTATGAAGGTACCTGTCTATTGCACTAAG
ACTGGTGTAAAACATTTGCACCACAAGGCTCAAGAGTTTGACATTGGAGTTTATTTTGAAGCAAATGGGC
ATGGCACTGCACTGTTTAGTACAGCTGTTGAAATGAAGATAAAACAATCAGCAGAACAACTGGAAGATAA
GAAAAGAAAAGCTGCTAAGATGCTTGAAAACATTATTGACTTGTTTAACCAGGTTGCAGACAGGAGAGTT
ATTAGCACTACCGATGCTGAAAGACAAGCAGTTACACCCCCAGGATTACAGGAGGCAATCAATGACCTGG
TGAAGAAGTACAAGCTTTCTCGAGCTTTTGTCCGGCCCTCTGGTACAGAAGATGTCGTCCGAGTATATGC
AGAAGCAGACTCACAAGAAAGTGCAGATCACCTTGCACATGAAGTGAGCTTGGCAGTATTTCAGCTGGCT
GGAGGAATTGGAGAAAGGCCCCAACCAGGTTTCTGA

Translation (501 aa):
MDLGAITKYSALHAKPNGLILQYGTAGFRTKAEHLDHVMFRMGLLAVLRSKQTKSTIGVMVTASHNPEED
NGVKLVDPLGEMLAPSWEEHATCLANAEEQDMQRVLIDISEKEAVNLQQDAFVVIGRDTRPSSEKLSQSV
IDGVTVLGGQFHDYGLLTTPQLHYMVYCRNTGGRYGKATIEGYYQKLSKAFVELTKQASCSGDEYRSLKV
DCANGIGALKLREMEHYFSQGLSVQLFNDGSKGKLNHLCGADFVKSHQKPPQGMEIKSNERCCSFDGDAD
RIVYYYHDADGHFHLIDGDKIATLISSFLKELLVEIGESLNIGVVQTAYANGSSTRYLEEVMKVPVYCTK
TGVKHLHHKAQEFDIGVYFEANGHGTALFSTAVEMKIKQSAEQLEDKKRKAAKMLENIIDLFNQVADRRV
ISTTDAERQAVTPPGLQEAINDLVKKYKLSRAFVRPSGTEDVVRVYAEADSQESADHLAHEVSLAVFQLA
GGIGERPQPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH