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Report for CCDS9408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9408.1 Public Homo sapiens 13 MED4 24 110 108 CCDS HistoryNCBI Gene:29079Re-query CCDS DB by CCDS ID:9408.1Re-query CCDS DB by GeneID:29079See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258648.7 ENSP00000258648.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258648.7Link to Ensembl Protein Viewer:ENSP00000258648.2Re-query CCDS DB by Nucleotide ID:ENST00000258648Re-query CCDS DB by Protein ID:ENSP00000258648
Original member Current member NCBI NM_014166.4 NP_054885.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014166.4Link to Protein Sequence:NP_054885.1Re-query CCDS DB by Nucleotide ID:NM_014166Re-query CCDS DB by Protein ID:NP_054885Link to BLAST:NP_054885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054885.1 270 Q9NPJ6-1 270 100% 0 0

Chromosomal Locations for CCDS 9408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48077139 48077311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48079844 48079975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48081645 48081731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48083371 48083428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48086282 48086452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48090352 48090418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48094954 48095078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGCTGCGTCTTCGAGTGGTGAGAAGGAGAAGGAGCGGCTGGGAGGCGGTTTGGGAGTGGCGGGTGGTA
ACAGCACACGAGAGCGGCTGCTGTCTGCGCTTGAGGACTTGGAGGTCCTGTCTAGGGAACTTATAGAAAT
GCTGGCAATTTCAAGAAACCAAAAGTTGTTACAGGCTGGAGAGGAAAACCAGGTCCTGGAGTTGTTAATT
CACCGAGATGGGGAATTTCAAGAACTAATGAAATTGGCACTTAATCAGGGAAAAATTCATCATGAAATGC
AAGTTTTAGAAAAAGAAGTAGAGAAGAGAGACAGTGATATTCAGCAGCTACAAAAACAGCTAAAGGAAGC
AGAACAAATACTGGCAACAGCTGTTTACCAAGCGAAGGAGAAACTCAAGTCAATAGAAAAAGCAAGAAAA
GGTGCTATCTCCTCTGAAGAAATAATTAAGTATGCACATAGGATCAGTGCAAGTAATGCTGTATGTGCTC
CACTGACCTGGGTTCCAGGGGACCCCCGGAGACCCTACCCAACTGATTTAGAGATGAGAAGTGGGTTACT
GGGTCAGATGAACAATCCTTCCACTAATGGCGTGAATGGCCATTTACCAGGAGATGCACTTGCAGCAGGA
AGATTGCCAGATGTCCTTGCTCCACAGTATCCATGGCAGTCAAATGACATGTCGATGAATATGTTACCAC
CAAATCATAGTAGTGACTTTTTGTTGGAACCTCCTGGGCATAATAAAGAAAATGAAGATGATGTAGAGAT
TATGTCAACGGACTCCTCAAGCAGTAGTAGTGAGTCTGATTGA

Translation (270 aa):
MAASSSGEKEKERLGGGLGVAGGNSTRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLI
HRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARK
GAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAG
RLPDVLAPQYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIMSTDSSSSSSESD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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