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Report for CCDS94237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94237.1 Public Homo sapiens 7 GALNT11 24 110 108 CCDS HistoryNCBI Gene:63917Re-query CCDS DB by CCDS ID:94237.1Re-query CCDS DB by GeneID:63917See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94237.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422997.6 ENSP00000389449.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422997.6Link to Ensembl Protein Viewer:ENSP00000389449.3Re-query CCDS DB by Nucleotide ID:ENST00000422997Re-query CCDS DB by Protein ID:ENSP00000389449
Original member Current member EBI ENST00000415421.5 ENSP00000410093.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415421.5Link to Ensembl Protein Viewer:ENSP00000410093.1Re-query CCDS DB by Nucleotide ID:ENST00000415421Re-query CCDS DB by Protein ID:ENSP00000410093
Original member Current member NCBI NM_001371473.1 NP_001358402.1 Accepted alive Link to Nucleotide Sequence:NM_001371473.1Link to Protein Sequence:NP_001358402.1Re-query CCDS DB by Nucleotide ID:NM_001371473Re-query CCDS DB by Protein ID:NP_001358402Link to BLAST:NP_001358402.1
Original member Current member NCBI NM_001371474.1 NP_001358403.1 Accepted alive Link to Nucleotide Sequence:NM_001371474.1Link to Protein Sequence:NP_001358403.1Re-query CCDS DB by Nucleotide ID:NM_001371474Re-query CCDS DB by Protein ID:NP_001358403Link to BLAST:NP_001358403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358402.1 202 Q8NCW6-2 202 100% 0 0
NP_001358403.1 202 Q8NCW6-2 202 100% 0 0

Chromosomal Locations for CCDS 94237.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 152094228 152094522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152100798 152100921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 152103112 152103301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGGAAGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTACATCTGCGACCTGGACAGTTTTGC
TTTTTGTTTATTTCAACTTCAGTGAAGTGACTCAGCCACTTAAGAATGTGCCCGTCAAGGGGTCTGGGCC
CCACGGACCATCTCCAAAAAAATTCTATCCCCGTTTCACTCGAGGCCCAAGTCGAGTGCTCGAGCCACAG
TTCAAAGCAAACAAAATTGACGATGTGATAGACAGTCGTGTTGAAGATCCAGAAGAAGGCCACTTGAAAT
TCTCTTCTGAATTAGGTATGATTTTTAATGAACGCGATCAAGAGTTGAGAGACTTGGGCTATCAGAAACA
TGCTTTTAATATGCTTATCAGTGACCGCTTGGGCTACCACAGAGATGTGCCAGACACAAGGAATGCAGCA
TGTAAAGAAAAGTTCTACCCACCTGACCTGCCAGCTGCTAGTGTTGTTATCTGTTTCTATAATGAAGCGT
TTTCTGCCTTGCTTCGGACAGTGCACAGTGTCATAGACCGCACGCCAGCACACCTGCTTCATGAGATCAT
CCTTGTGGATGATGATAGTGACTTTGGTAAGGAATGCTGCACCTGGTAA

Translation (202 aa):
MGSVTVRYFCYGCLFTSATWTVLLFVYFNFSEVTQPLKNVPVKGSGPHGPSPKKFYPRFTRGPSRVLEPQ
FKANKIDDVIDSRVEDPEEGHLKFSSELGMIFNERDQELRDLGYQKHAFNMLISDRLGYHRDVPDTRNAA
CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDFGKECCTW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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