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Report for CCDS9432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9432.1 Public Homo sapiens 13 THSD1 24 110 108 CCDS HistoryNCBI Gene:55901Re-query CCDS DB by CCDS ID:9432.1Re-query CCDS DB by GeneID:55901See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258613.5 ENSP00000258613.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258613.5Link to Ensembl Protein Viewer:ENSP00000258613.4Re-query CCDS DB by Nucleotide ID:ENST00000258613Re-query CCDS DB by Protein ID:ENSP00000258613
Original member Current member NCBI NM_018676.4 NP_061146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018676.4Link to Protein Sequence:NP_061146.1Re-query CCDS DB by Nucleotide ID:NM_018676Re-query CCDS DB by Protein ID:NP_061146Link to BLAST:NP_061146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061146.1 852 Q9NS62-1 852 100% 0 0

Chromosomal Locations for CCDS 9432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52377411 52378789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52386028 52386186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52397232 52398194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52402543 52402600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGAAACCAATGTTGAAAGACTTTTCAAATCTATTGTTGGTGGTACTCTGTGACTATGTTCTTGGAGAAG
CTGAATATCTTCTCTTGAGAGAGCCAGGCCATGTAGCACTAAGCAACGACACAGTGTATGTGGATTTCCA
GTATTTTGATGGTGCTAATGGGACACTGAGGAATGTATCTGTCCTGCTGTTGGAGGCCAACACCAATCAG
ACTGTAACTACCAAGTACCTCCTGACCAACCAGTCCCAGGGAACACTAAAGTTTGAGTGCTTCTATTTCA
AGGAGGCTGGTGACTACTGGTTCACAATGACTCCAGAAGCAACAGACAACAGCACTCCATTCCCCTGGTG
GGAGAAAAGTGCCTTTCTGAAGGTGGAATGGCCTGTCTTTCACGTTGACTTGAATAGGAGTGCCAAGGCA
GCAGAAGGCACCTTCCAAGTGGGCCTATTTACCAGTCAACCACTGTGCCCGTTTCCTGTGGACAAGCCCA
ACATCGTAGTGGATGTCATCTTCACCAACAGTCTTCCTGAGGCAAGAAGAAATTCAAGACAGCCGCTGGA
AATAAGAACCAGCAAAAGGACAGAACTTGCTCAAGGTCAGTGGGTTGAGTTTGGCTGTGCACCCTTGGGG
CCAGAAGCCTATGTCACCGTGGTGCTGAAGCTGCTTGGGCGAGACTCAGTCATTACCTCCACAGGACCCA
TTGACCTGGCCCAGAAATTTGGATACAAACTGGTGATGGTGCCAGAACTCACATGTGAGTCCGGGGTAGA
GGTGACAGTGCTGCCTCCACCATGCACCTTCGTCCAAGGAGTGGTCACTGTCTTCAAGGAGGCCCCCAGA
TACCCTGGGAAGAGGACCATTCACTTGGCTGAAAACAGCCTGCCCCTGGGAGAGAGGAGGACAATTTTTA
ACTGTACTTTGTTTGACATGGGGAAGAATAAGTACTGCTTTGACTTTGGCATTTCAAGCAGAAGCCATTT
TTCTGCAAAGGAGGAGTGCATGCTAATTCAGAGAAATACAGAAACTTGGGGACTGTGGCAGCCATGGAGC
CAGTGTAGTGCCACATGTGGGGATGGTGTCAGAGAGCGTCGCCGAGTGTGTCTCACTTCCTTCCCCTCCA
GTCCTGTCTGCCCTGGAATGTCCTTGGAGGCCTCCCTGTGTTCCCTGGAGGAGTGTGCTGCTTTCCAGCC
ATCCAGCCCATCTCCTCTTCAGCCCCAGGGTCCAGTGAAGTCCAACAACATCGTGACTGTCACTGGTATA
TCCTTGTGCTTGTTCATCATCATTGCCACTGTGCTCATCACGCTGTGGAGGAGGTTCGGCCGGCCAGCCA
AGTGCAGCACACCTGCTCGACACAACTCCATCCACTCCCCCAGCTTCCGGAAGAACTCGGACGAGGAGAA
TATCTGCGAGCTGAGCGAGCAGCGCGGGAGCTTCTCGGATGGGGGAGACGGGCCCACGGGGAGTCCAGGG
GACACAGGCATCCCTCTGACCTACAGGCGGAGCGGGCCGGTACCTCCCGAGGATGATGCCTCTGGCAGCG
AGAGCTTCCAGTCCAACGCCCAGAAGATAATCCCACCTCTGTTCAGCTACCGCCTTGCCCAGCAGCAGTT
AAAGGAGATGAAAAAGAAAGGTCTGACGGAAACTACCAAAGTGTATCACGTGTCTCAGAGTCCCCTGACA
GACACTGCCATTGATGCGGCCCCCAGCGCTCCCTTAGATTTGGAAAGCCCGGAAGAAGCTGCAGCAAACA
AGTTCCGGATCAAATCCCCATTTCCGGAGCAGCCCGCGGTCAGTGCCGGGGAAAGGCCTCCCTCCAGGCT
GGATCTAAATGTGACTCAGGCCAGTTGTGCCATAAGCCCCAGCCAGACTCTGATCCGCAAGTCACAGGCA
AGGCACGTGGGCAGCAGAGGGGGCCCGTCCGAAAGGAGCCATGCCAGGAACGCCCATTTCAGGAGGACAG
CGAGTTTCCATGAAGCCAGGCAGGCCCGGCCGTTCCGAGAGAGGAGCATGTCCACTCTGACTCCACGGCA
GGCCCCTGCCTACAGCTCTAGGACGCGGACCTGCGAGCAGGCAGAGGACAGATTTAGGCCTCAGAGTCGA
GGTGCCCACCTGTTTCCTGAAAAACTGGAGCATTTCCAAGAGGCAAGTGGAACCCGTGGTCCATTAAACC
CTCTCCCTAAATCCTACACTTTGGGGCAGCCCTTGAGGAAACCAGACCTTGGGGATCACCAGGCAGGATT
AGTGGCCGGAATTGAGAGAACAGAGCCCCACAGAGCTCGTCGGGGACCGTCCCCCAGTCACAAGAGTGTC
TCAAGGAAGCAGTCTTCTCCCATATCCCCCAAAGATAACTACCAGAGGGTCAGTTCTCTGAGCCCTTCTC
AGTGTAGAAAAGACAAGTGTCAAAGCTTCCCCACTCACCCTGAGTTTGCCTTCTATGACAATACGTCGTT
TGGCCTCACTGAGGCTGAGCAGAGGATGCTGGACCTCCCAGGATATTTTGGGTCAAATGAAGAGGATGAA
ACCACAAGTACACTTAGCGTGGAGAAGCTGGTGATCTAG

Translation (852 aa):
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVSVLLLEANTNQ
TVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKSAFLKVEWPVFHVDLNRSAKA
AEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARRNSRQPLEIRTSKRTELAQGQWVEFGCAPLG
PEAYVTVVLKLLGRDSVITSTGPIDLAQKFGYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPR
YPGKRTIHLAENSLPLGERRTIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNTETWGLWQPWS
QCSATCGDGVRERRRVCLTSFPSSPVCPGMSLEASLCSLEECAAFQPSSPSPLQPQGPVKSNNIVTVTGI
SLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSEQRGSFSDGGDGPTGSPG
DTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLT
DTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQA
RHVGSRGGPSERSHARNAHFRRTASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSR
GAHLFPEKLEHFQEASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSV
SRKQSSPISPKDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYFGSNEEDE
TTSTLSVEKLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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