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Report for CCDS9462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9462.1 Public Homo sapiens 13 RBM26 24 110 108 CCDS HistoryNCBI Gene:64062Re-query CCDS DB by CCDS ID:9462.1Re-query CCDS DB by GeneID:64062See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267229.11 ENSP00000267229.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000267229.11Link to Ensembl Protein Viewer:ENSP00000267229.7Re-query CCDS DB by Nucleotide ID:ENST00000267229Re-query CCDS DB by Protein ID:ENSP00000267229
Original member Current member NCBI NM_022118.5 NP_071401.3 Accepted alive Link to Nucleotide Sequence:NM_022118.5Link to Protein Sequence:NP_071401.3Re-query CCDS DB by Nucleotide ID:NM_022118Re-query CCDS DB by Protein ID:NP_071401Link to BLAST:NP_071401.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071401.3 980 Q5T8P6-3 980 100% 0 0

Chromosomal Locations for CCDS 9462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 79320621 79320710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79322349 79322462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79334344 79334430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79337102 79337302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79341123 79341227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79342664 79342831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79344248 79344322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79344669 79344794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79354439 79354561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79355220 79355384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79358274 79358433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79359575 79359686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79365578 79365718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79366055 79366195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79366633 79366872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79368730 79368990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79370945 79371162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79371842 79371930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79377379 79377515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79378789 79378907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 79405704 79405774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGGTTTCTAAAATGATCATTGAAAACTTCGAGGCACTCAAGTCCTGGCTCAGCAAGACTCTCGAGCCCA
TCTGTGATGCAGATCCATCCGCCCTAGCAAAATATGTTCTGGCTTTGGTAAAGAAAGACAAAAGTGAAAA
AGAGTTAAAGGCATTATGTATTGATCAGCTGGATGTATTTCTTCAGAAAGAGACACAGATATTTGTGGAA
AAACTTTTTGATGCTGTGAATACAAAGAGTTACCTACCTCCTCCAGAGCAGCCATCATCAGGAAGCCTGA
AGGTAGAATTTTTTCCACACCAAGAAAAAGATATAAAGAAGGAAGAGATCACTAAGGAGGAAGAGCGAGA
GAAGAAGTTTTCTAGAAGGCTAAATCACAGTCCTCCCCAGTCAAGCTCCCGATACAGGGAAAATAGAAGC
CGTGATGAGAGGAAAAAAGATGATCGTTCTCGCAAAAGAGATTATGATCGAAACCCTCCTCGAAGAGATT
CATACAGAGACCGGTACAATAGAAGACGAGGGCGGAGTCGCAGTTATAGCAGGAGTCGAAGTCGAAGTTG
GAGTAAAGAGAGGCTTCGTGAGAGGGACAGAGATAGAAGCAGGACTAGAAGCAGAAGCAGAACACGAAGC
AGGGAAAGGGATCTGGTAAAACCTAAATATGACCTGGATAGAACAGATCCATTAGAAAATAATTATACTC
CAGTCTCTTCGGTACCTAGTATTTCATCTGGCCACTACCCTGTACCTACTTTGAGCAGCACTATTACAGT
AATTGCTCCTACTCATCATGGAAACAACACTACCGAAAGTTGGTCTGAATTTCATGAAGACCAAGTGGAC
CATAACTCTTACGTAAGACCACCCATGCCAAAGAAACGGTGTAGAGACTATGATGAAAAGGGTTTTTGTA
TGAGAGGAGACATGTGTCCTTTTGATCATGGAAGTGATCCAGTAGTTGTAGAAGATGTGAATCTTCCTGG
TATGCTGCCTTTCCCAGCACAGCCTCCTGTTGTTGAAGGACCACCTCCTCCTGGACTCCCCCCACCTCCA
CCAATTCTTACACCCCCACCTGTGAATCTCAGGCCCCCAGTACCACCGCCAGGTCCATTGCCACCCAGTC
TCCCACCTGTTACAGGACCACCACCTCCACTTCCTCCTTTGCAGCCATCTGGCATGGATGCTCCTCCAAA
CTCTGCAACCAGTTCTGTTCCTACTGTAGTAACAACTGGCATTCATCACCAGCCTCCTCCTGCTCCACCC
TCTCTTTTTACTGCAGATACATATGACACAGATGGCTACAATCCTGAAGCCCCAAGCATAACAAACACTT
CCAGACCTATGTATAGACACAGAGTGCATGCACAAAGGCCCAACTTGATAGGACTAACATCAGGGGATAT
GGATTTGCCACCCAGAGAAAAGCCTCCCAATAAAAGCAGTATGAGGATAGTAGTGGACTCAGAATCAAGG
AAAAGAACCATTGGTTCTGGAGAGCCTGGAGTTCCTACAAAGAAGACTTGGTTTGATAAACCAAATTTTA
ATAGAACAAACAGCCCAGGCTTTCAGAAGAAGGTTCAATTTGGAAATGAAAATACCAAGCTTGAACTTAG
AAAAGTTCCTCCAGAATTAAATAATATCAGCAAACTTAATGAACATTTTAGTCGATTTGGAACCTTGGTT
AACTTACAGGTTGCTTATAATGGTGATCCTGAAGGTGCCCTAATCCAATTTGCAACATACGAAGAAGCAA
AGAAAGCAATATCAAGTACGGAAGCAGTATTAAACAATCGCTTTATTAAGGTTTATTGGCACAGAGAAGG
AAGCACCCAACAGTTACAAACTACTTCTCCAAAGCCTTTAGTCCAGCAGCCCATTTTGCCTGTTGTGAAG
CAGTCAGTCAAAGAGCGGCTGGGTCCAGTACCTTCAAGTACTATTGAACCTGCAGAAGCCCAGAGTGCCT
CTTCAGACCTTCCTCAGGTGTTGTCTACATCTACTGGCCTAACAAAAACAGTGTATAATCCAGCTGCTTT
GAAGGCTGCACAGAAAACCTTACTTGTTTCCACCTCTGCAGTTGATAATAATGAAGCACAGAAAAAAAAA
CAGGAGGCATTGAAACTTCAGCAGGATGTAAGGAAAAGGAAACAAGAAATTTTAGAAAAGCACATTGAAA
CACAGAAGATGTTAATTTCAAAACTGGAGAAAAACAAAACAATGAAGTCTGAAGATAAAGCAGAAATAAT
GAAAACTTTAGAGGTTTTGACAAAAAATATTACCAAGTTGAAAGATGAGGTCAAAGCTGCTTCTCCTGGA
CGCTGTCTTCCAAAAAGTATAAAAACCAAGACTCAGATGCAGAAGGAATTACTTGACACAGAACTGGATT
TATATAAGAAGATGCAGGCTGGAGAAGAAGTCACTGAACTTAGGAGAAAGTATACAGAATTACAGCTGGA
AGCTGCCAAACGAGGGATTCTTTCATCTGGTCGGGGCAGAGGAATTCATTCAAGAGGTCGAGGTGCAGTT
CATGGCCGAGGCAGGGGGCGAGGGCGAGGGCGAGGTGTGCCTGGTCATGCTGTGGTGGATCACCGTCCCA
GGGCATTGGAGATTTCTGCATTTACGGAGAGCGATAGAGAAGATCTTCTTCCTCATTTTGCGCAATATGG
TGAAATTGAAGATTGTCAGATTGATGATTCCTCACTTCATGCAGTAATTACATTCAAGACAAGAGCAGAA
GCTGAAGCAGCTGCAGTTCATGGAGCTCGTTTCAAAGGGCAAGATCTAAAACTGGCATGGAATAAACCAG
TAACTAATATTTCAGCTGTTGAAACAGAAGAAGTTGAGCCTGATGAAGAAGAATTTCAGGAAGAGTCTTT
GGTGGATGACTCATTACTTCAAGATGATGATGAAGAAGAAGAGGACAATGAATCTCGTTCTTGGAGAAGA
TGA

Translation (980 aa):
MVSKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVE
KLFDAVNTKSYLPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRLNHSPPQSSSRYRENRS
RDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYSRSRSRSWSKERLRERDRDRSRTRSRSRTRS
RERDLVKPKYDLDRTDPLENNYTPVSSVPSISSGHYPVPTLSSTITVIAPTHHGNNTTESWSEFHEDQVD
HNSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNLPGMLPFPAQPPVVEGPPPPGLPPPP
PILTPPPVNLRPPVPPPGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPP
SLFTADTYDTDGYNPEAPSITNTSRPMYRHRVHAQRPNLIGLTSGDMDLPPREKPPNKSSMRIVVDSESR
KRTIGSGEPGVPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLV
NLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGSTQQLQTTSPKPLVQQPILPVVK
QSVKERLGPVPSSTIEPAEAQSASSDLPQVLSTSTGLTKTVYNPAALKAAQKTLLVSTSAVDNNEAQKKK
QEALKLQQDVRKRKQEILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTLEVLTKNITKLKDEVKAASPG
RCLPKSIKTKTQMQKELLDTELDLYKKMQAGEEVTELRRKYTELQLEAAKRGILSSGRGRGIHSRGRGAV
HGRGRGRGRGRGVPGHAVVDHRPRALEISAFTESDREDLLPHFAQYGEIEDCQIDDSSLHAVITFKTRAE
AEAAAVHGARFKGQDLKLAWNKPVTNISAVETEEVEPDEEEFQEESLVDDSLLQDDDEEEEDNESRSWRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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