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Report for CCDS9462.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9462.1 |
Public |
Homo sapiens |
13 |
RBM26 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64062](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9462.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64062](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9462.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000267229.11 |
ENSP00000267229.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000267229.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000267229.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000267229](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000267229](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_022118.5 |
NP_071401.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_022118.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_071401.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_022118](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_071401](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_071401.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_071401.3 |
980 |
Q5T8P6-3 |
980 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 9462.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2943 nt): ATGGTTTCTAAAATGATCATTGAAAACTTCGAGGCACTCAAGTCCTGGCTCAGCAAGACTCTCGAGCCCA TCTGTGATGCAGATCCATCCGCCCTAGCAAAATATGTTCTGGCTTTGGTAAAGAAAGACAAAAGTGAAAA AGAGTTAAAGGCATTATGTATTGATCAGCTGGATGTATTTCTTCAGAAAGAGACACAGATATTTGTGGAA AAACTTTTTGATGCTGTGAATACAAAGAGTTACCTACCTCCTCCAGAGCAGCCATCATCAGGAAGCCTGA AGGTAGAATTTTTTCCACACCAAGAAAAAGATATAAAGAAGGAAGAGATCACTAAGGAGGAAGAGCGAGA GAAGAAGTTTTCTAGAAGGCTAAATCACAGTCCTCCCCAGTCAAGCTCCCGATACAGGGAAAATAGAAGC CGTGATGAGAGGAAAAAAGATGATCGTTCTCGCAAAAGAGATTATGATCGAAACCCTCCTCGAAGAGATT CATACAGAGACCGGTACAATAGAAGACGAGGGCGGAGTCGCAGTTATAGCAGGAGTCGAAGTCGAAGTTG GAGTAAAGAGAGGCTTCGTGAGAGGGACAGAGATAGAAGCAGGACTAGAAGCAGAAGCAGAACACGAAGC AGGGAAAGGGATCTGGTAAAACCTAAATATGACCTGGATAGAACAGATCCATTAGAAAATAATTATACTC CAGTCTCTTCGGTACCTAGTATTTCATCTGGCCACTACCCTGTACCTACTTTGAGCAGCACTATTACAGT AATTGCTCCTACTCATCATGGAAACAACACTACCGAAAGTTGGTCTGAATTTCATGAAGACCAAGTGGAC CATAACTCTTACGTAAGACCACCCATGCCAAAGAAACGGTGTAGAGACTATGATGAAAAGGGTTTTTGTA TGAGAGGAGACATGTGTCCTTTTGATCATGGAAGTGATCCAGTAGTTGTAGAAGATGTGAATCTTCCTGG TATGCTGCCTTTCCCAGCACAGCCTCCTGTTGTTGAAGGACCACCTCCTCCTGGACTCCCCCCACCTCCA CCAATTCTTACACCCCCACCTGTGAATCTCAGGCCCCCAGTACCACCGCCAGGTCCATTGCCACCCAGTC TCCCACCTGTTACAGGACCACCACCTCCACTTCCTCCTTTGCAGCCATCTGGCATGGATGCTCCTCCAAA CTCTGCAACCAGTTCTGTTCCTACTGTAGTAACAACTGGCATTCATCACCAGCCTCCTCCTGCTCCACCC TCTCTTTTTACTGCAGATACATATGACACAGATGGCTACAATCCTGAAGCCCCAAGCATAACAAACACTT CCAGACCTATGTATAGACACAGAGTGCATGCACAAAGGCCCAACTTGATAGGACTAACATCAGGGGATAT GGATTTGCCACCCAGAGAAAAGCCTCCCAATAAAAGCAGTATGAGGATAGTAGTGGACTCAGAATCAAGG AAAAGAACCATTGGTTCTGGAGAGCCTGGAGTTCCTACAAAGAAGACTTGGTTTGATAAACCAAATTTTA ATAGAACAAACAGCCCAGGCTTTCAGAAGAAGGTTCAATTTGGAAATGAAAATACCAAGCTTGAACTTAG AAAAGTTCCTCCAGAATTAAATAATATCAGCAAACTTAATGAACATTTTAGTCGATTTGGAACCTTGGTT AACTTACAGGTTGCTTATAATGGTGATCCTGAAGGTGCCCTAATCCAATTTGCAACATACGAAGAAGCAA AGAAAGCAATATCAAGTACGGAAGCAGTATTAAACAATCGCTTTATTAAGGTTTATTGGCACAGAGAAGG AAGCACCCAACAGTTACAAACTACTTCTCCAAAGCCTTTAGTCCAGCAGCCCATTTTGCCTGTTGTGAAG CAGTCAGTCAAAGAGCGGCTGGGTCCAGTACCTTCAAGTACTATTGAACCTGCAGAAGCCCAGAGTGCCT CTTCAGACCTTCCTCAGGTGTTGTCTACATCTACTGGCCTAACAAAAACAGTGTATAATCCAGCTGCTTT GAAGGCTGCACAGAAAACCTTACTTGTTTCCACCTCTGCAGTTGATAATAATGAAGCACAGAAAAAAAAA CAGGAGGCATTGAAACTTCAGCAGGATGTAAGGAAAAGGAAACAAGAAATTTTAGAAAAGCACATTGAAA CACAGAAGATGTTAATTTCAAAACTGGAGAAAAACAAAACAATGAAGTCTGAAGATAAAGCAGAAATAAT GAAAACTTTAGAGGTTTTGACAAAAAATATTACCAAGTTGAAAGATGAGGTCAAAGCTGCTTCTCCTGGA CGCTGTCTTCCAAAAAGTATAAAAACCAAGACTCAGATGCAGAAGGAATTACTTGACACAGAACTGGATT TATATAAGAAGATGCAGGCTGGAGAAGAAGTCACTGAACTTAGGAGAAAGTATACAGAATTACAGCTGGA AGCTGCCAAACGAGGGATTCTTTCATCTGGTCGGGGCAGAGGAATTCATTCAAGAGGTCGAGGTGCAGTT CATGGCCGAGGCAGGGGGCGAGGGCGAGGGCGAGGTGTGCCTGGTCATGCTGTGGTGGATCACCGTCCCA GGGCATTGGAGATTTCTGCATTTACGGAGAGCGATAGAGAAGATCTTCTTCCTCATTTTGCGCAATATGG TGAAATTGAAGATTGTCAGATTGATGATTCCTCACTTCATGCAGTAATTACATTCAAGACAAGAGCAGAA GCTGAAGCAGCTGCAGTTCATGGAGCTCGTTTCAAAGGGCAAGATCTAAAACTGGCATGGAATAAACCAG TAACTAATATTTCAGCTGTTGAAACAGAAGAAGTTGAGCCTGATGAAGAAGAATTTCAGGAAGAGTCTTT GGTGGATGACTCATTACTTCAAGATGATGATGAAGAAGAAGAGGACAATGAATCTCGTTCTTGGAGAAGA TGA
Translation (980 aa): MVSKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVE KLFDAVNTKSYLPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRLNHSPPQSSSRYRENRS RDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYSRSRSRSWSKERLRERDRDRSRTRSRSRTRS RERDLVKPKYDLDRTDPLENNYTPVSSVPSISSGHYPVPTLSSTITVIAPTHHGNNTTESWSEFHEDQVD HNSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNLPGMLPFPAQPPVVEGPPPPGLPPPP PILTPPPVNLRPPVPPPGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPP SLFTADTYDTDGYNPEAPSITNTSRPMYRHRVHAQRPNLIGLTSGDMDLPPREKPPNKSSMRIVVDSESR KRTIGSGEPGVPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRFGTLV NLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKVYWHREGSTQQLQTTSPKPLVQQPILPVVK QSVKERLGPVPSSTIEPAEAQSASSDLPQVLSTSTGLTKTVYNPAALKAAQKTLLVSTSAVDNNEAQKKK QEALKLQQDVRKRKQEILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTLEVLTKNITKLKDEVKAASPG RCLPKSIKTKTQMQKELLDTELDLYKKMQAGEEVTELRRKYTELQLEAAKRGILSSGRGRGIHSRGRGAV HGRGRGRGRGRGVPGHAVVDHRPRALEISAFTESDREDLLPHFAQYGEIEDCQIDDSSLHAVITFKTRAE AEAAAVHGARFKGQDLKLAWNKPVTNISAVETEEVEPDEEEFQEESLVDDSLLQDDDEEEEDNESRSWRR
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