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Report for CCDS94673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94673.1 Public Homo sapiens X PABIR3 24 110 108 CCDS HistoryNCBI Gene:159091Re-query CCDS DB by CCDS ID:94673.1Re-query CCDS DB by GeneID:159091See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000643150.1 ENSP00000495073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643150.1Link to Ensembl Protein Viewer:ENSP00000495073.1Re-query CCDS DB by Nucleotide ID:ENST00000643150Re-query CCDS DB by Protein ID:ENSP00000495073
Original member Current member NCBI NM_001365748.2 NP_001352677.1 Accepted alive Link to Nucleotide Sequence:NM_001365748.2Link to Protein Sequence:NP_001352677.1Re-query CCDS DB by Nucleotide ID:NM_001365748Re-query CCDS DB by Protein ID:NP_001352677Link to BLAST:NP_001352677.1

Chromosomal Locations for CCDS 94673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134807599 134807708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134814771 134814849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134829226 134829282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134845205 134845248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134845347 134845401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134847383 134847475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134847883 134847971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134854091 134854217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCACAGGAGAAAATGAAACTAGGTTTCAAGTCGCTGCCGAGTTCCACTACCGCAGACGGCAACATTC
TGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGTTTTAATTCACAGGTGTTGCAAGCTGACAT
GTTAAGAATTAGGACAAACAGAACAACATTTAGGAATCGACGCTCTCTGTTGTTGCCACCTCCTCCCTTT
CATGGTTCCATCAGCCGCCTTCATCAAATCAAACAGGAAGAAGCCATGGATTTAATAAATAGAGAAACAA
TGTCTGAATGGAAGCTACAAAGTGAGATACAGATAAGTCACTCTTGGGAAGAAGGCTTGAAACTGAATGA
CAATGGCTTACAGAAATCATCCTCTCTAAAGTGCATTGATTTAACTCCAGTATCCTCAATGGCTTCTTCC
ATCAAGAAGACTGGGAAGCAGTGTTTCTCTCCATCATTACAAACTTGTGTGAGTTGCACTGGTTCGCCTT
CAAGTCCTATTCCCAGTCCTATGCAACAATACATCATTCTACTTCCAGCTACTTTTGATGGAAACGACAG
CAATGCTGGATCTTCTGGTAATTCGTCAGCTGAAATCGGCACTGTCACAAACTCTCCTGTGTCACCTTCT
GATACTGGTTCTCATTTGTTCTAG

Translation (217 aa):
MAQEKMKLGFKSLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRIRTNRTTFRNRRSLLLPPPPF
HGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEGLKLNDNGLQKSSSLKCIDLTPVSSMASS
IKKTGKQCFSPSLQTCVSCTGSPSSPIPSPMQQYIILLPATFDGNDSNAGSSGNSSAEIGTVTNSPVSPS
DTGSHLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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