NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9479.1 Public Homo sapiens 13 DNAJC3 24 110 108 CCDS HistoryNCBI Gene:5611Re-query CCDS DB by CCDS ID:9479.1Re-query CCDS DB by GeneID:5611See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000602402.6 ENSP00000473631.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000602402.6Link to Ensembl Protein Viewer:ENSP00000473631.1Re-query CCDS DB by Nucleotide ID:ENST00000602402Re-query CCDS DB by Protein ID:ENSP00000473631
Original member Current member NCBI NM_006260.5 NP_006251.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006260.5Link to Protein Sequence:NP_006251.1Re-query CCDS DB by Nucleotide ID:NM_006260Re-query CCDS DB by Protein ID:NP_006251Link to BLAST:NP_006251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006251.1 504 Q13217 504 100% 0 0

Chromosomal Locations for CCDS 9479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95677256 95677337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95709227 95709337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95723242 95723366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95725178 95725252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95757644 95757796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95760040 95760221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95760679 95760798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95763643 95763748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95763833 95763953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95785939 95786071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95787007 95787155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95790873 95791030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGTGGCCCCCGGCTCCGTGACCAGCCGGCTGGGCTCGGTATTCCCCTTCCTGCTAGTCCTGGTGGATC
TGCAGTACGAAGGTGCTGAATGTGGAGTAAATGCAGATGTTGAGAAACATCTTGAATTGGGCAAGAAATT
ACTTGCAGCTGGACAGCTAGCTGATGCTTTATCTCAGTTTCATGCTGCCGTAGATGGTGACCCTGATAAC
TATATTGCTTATTATCGGAGGGCTACTGTCTTTTTAGCTATGGGCAAATCAAAAGCTGCACTTCCTGATT
TAACTAAAGTGATTCAATTGAAGATGGACTTCACTGCAGCAAGATTACAGAGAGGTCACTTATTACTCAA
ACAAGGAAAACTTGATGAAGCAGAAGATGATTTTAAAAAAGTGCTCAAATCTAATCCAAGTGAAAATGAA
GAAAAGGAAGCACAGTCTCAACTTATAAAATCTGATGAAATGCAGCGTTTGCGTTCACAAGCACTTAACG
CTTTTGGAAGTGGAGATTATACTGCTGCTATAGCCTTCCTTGATAAGATTTTAGAGGTTTGTGTTTGGGA
TGCAGAACTACGGGAACTTCGAGCTGAATGTTTTATAAAAGAAGGAGAACCTAGGAAAGCTATAAGTGAC
TTAAAAGCTGCGTCAAAGTTGAAGAATGATAATACTGAAGCGTTTTATAAAATAAGCACACTGTACTACC
AACTAGGAGACCACGAACTGTCCCTCAGTGAAGTTCGGGAATGTCTTAAACTTGACCAGGATCATAAAAG
GTGTTTTGCACACTATAAACAAGTAAAGAAACTTAATAAGCTGATTGAGTCAGCTGAAGAGCTCATCAGA
GATGGCAGATACACAGATGCTACCAGCAAATATGAATCTGTCATGAAAACAGAGCCAAGCATTGCTGAAT
ATACAGTTCGTTCAAAGGAGAGGATTTGCCACTGCTTTTCTAAGGACGAGAAGCCTGTTGAAGCTATTAG
GGTTTGTTCTGAAGTTTTACAGATGGAACCTGACAATGTGAATGCCCTGAAAGATCGAGCAGAGGCCTAT
TTGATAGAGGAAATGTATGATGAAGCTATTCAGGATTATGAAACTGCTCAGGAACACAATGAAAATGATC
AGCAGATTCGAGAAGGTCTAGAGAAAGCACAAAGATTATTGAAACAGTCGCAGAAACGAGATTATTATAA
AATCTTGGGAGTAAAAAGAAATGCCAAAAAGCAAGAAATTATTAAAGCATACCGAAAATTAGCACTGCAG
TGGCACCCAGATAACTTCCAGAATGAAGAAGAAAAGAAAAAAGCTGAGAAAAAGTTCATTGATATAGCAG
CTGCTAAAGAAGTCCTCTCTGATCCAGAAATGAGAAAGAAGTTTGACGACGGAGAAGATCCTTTGGATGC
AGAGAGCCAGCAAGGAGGCGGCGGCAACCCTTTCCACAGAAGCTGGAACTCATGGCAAGGGTTCAATCCC
TTCAGCTCAGGCGGACCATTTAGATTTAAATTCCACTTCAATTAA

Translation (504 aa):
MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN
YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE
EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD
LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR
DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY
LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNP
FSSGGPFRFKFHFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH