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Report for CCDS9504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9504.1 Public Homo sapiens 13 POGLUT2 24 110 108 CCDS HistoryNCBI Gene:79070Re-query CCDS DB by CCDS ID:9504.1Re-query CCDS DB by GeneID:79070See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376004.5 ENSP00000365172.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376004.5Link to Ensembl Protein Viewer:ENSP00000365172.4Re-query CCDS DB by Nucleotide ID:ENST00000376004Re-query CCDS DB by Protein ID:ENSP00000365172
Original member Current member NCBI NM_024089.3 NP_076994.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024089.3Link to Protein Sequence:NP_076994.2Re-query CCDS DB by Nucleotide ID:NM_024089Re-query CCDS DB by Protein ID:NP_076994Link to BLAST:NP_076994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076994.2 502 Q6UW63 502 100% 0 0

Chromosomal Locations for CCDS 9504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 102784495 102784512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102786232 102786339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102787834 102787923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102789012 102789221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102790901 102791138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102791258 102791430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102793341 102793418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102793601 102793806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102796804 102797009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102798489 102798670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGTTTGGCACTTTGCTACTTTATTGCTTCTTTCTGGCGACAGTTCCAGCACTCGCCGAGACCGGCGGAG
AAAGGCAGCTGAGCCCGGAGAAGAGCGAAATATGGGGACCCGGGCTAAAAGCAGACGTCGTCCTTCCCGC
CCGCTATTTCTATATTCAGGCAGTGGATACATCAGGGAATAAATTCACATCTTCTCCAGGCGAAAAGGTC
TTCCAGGTGAAAGTCTCAGCACCAGAGGAGCAATTCACTAGAGTTGGAGTCCAGGTTTTAGACCGAAAAG
ATGGGTCCTTCATAGTAAGATACAGAATGTATGCAAGCTACAAAAATCTGAAGGTGGAAATTAAATTCCA
AGGGCAACATGTGGCCAAATCCCCATATATTTTAAAAGGGCCGGTTTACCATGAGAACTGTGACTGTCCT
CTGCAAGATAGTGCAGCCTGGCTACGGGAGATGAACTGCCCTGAAACCATTGCTCAGATTCAGAGAGATC
TGGCACATTTCCCTGCTGTGGATCCAGAAAAGATTGCAGTAGAAATCCCAAAAAGATTTGGACAGAGGCA
GAGCCTATGTCACTACACCTTAAAGGATAACAAGGTTTATATCAAGACTCATGGTGAACATGTAGGTTTT
AGAATTTTCATGGATGCCATACTACTTTCTTTGACTAGAAAGGTGAAGATGCCAGATGTGGAGCTCTTTG
TTAATTTGGGAGACTGGCCTTTGGAAAAAAAGAAATCCAATTCAAACATCCATCCGATCTTTTCCTGGTG
TGGCTCCACAGATTCCAAGGATATCGTGATGCCTACGTACGATTTGACTGATTCTGTTCTGGAAACCATG
GGCCGGGTAAGTCTGGATATGATGTCCGTGCAAGCTAACACGGGTCCTCCCTGGGAAAGCAAAAATTCCA
CTGCCGTCTGGAGAGGGCGAGACAGCCGCAAAGAGAGACTCGAGCTGGTTAAACTCAGTAGAAAACACCC
AGAACTCATAGACGCTGCTTTCACCAACTTTTTCTTCTTTAAACACGATGAAAACCTGTATGGTCCCATT
GTGAAACATATTTCATTTTTTGATTTCTTCAAGCATAAGTATCAAATAAATATCGATGGCACTGTAGCAG
CTTATCGCCTGCCATATTTGCTAGTTGGTGACAGTGTTGTGCTGAAGCAGGATTCCATCTACTATGAACA
TTTTTACAATGAGCTGCAGCCCTGGAAACACTACATTCCAGTTAAGAGCAACCTGAGCGATCTGCTAGAA
AAACTTAAATGGGCGAAAGATCACGATGAAGAGGCCAAAAAGATAGCAAAAGCAGGACAAGAATTTGCAA
GAAATAATCTCATGGGCGATGACATATTCTGTTATTATTTCAAACTTTTCCAGGAATATGCCAATTTACA
AGTGAGTGAGCCCCAAATCCGAGAGGGCATGAAAAGGGTAGAACCACAGACTGAGGACGACCTCTTCCCT
TGTACTTGCCATAGGAAAAAGACCAAAGATGAACTCTGA

Translation (502 aa):
MFGTLLLYCFFLATVPALAETGGERQLSPEKSEIWGPGLKADVVLPARYFYIQAVDTSGNKFTSSPGEKV
FQVKVSAPEEQFTRVGVQVLDRKDGSFIVRYRMYASYKNLKVEIKFQGQHVAKSPYILKGPVYHENCDCP
LQDSAAWLREMNCPETIAQIQRDLAHFPAVDPEKIAVEIPKRFGQRQSLCHYTLKDNKVYIKTHGEHVGF
RIFMDAILLSLTRKVKMPDVELFVNLGDWPLEKKKSNSNIHPIFSWCGSTDSKDIVMPTYDLTDSVLETM
GRVSLDMMSVQANTGPPWESKNSTAVWRGRDSRKERLELVKLSRKHPELIDAAFTNFFFFKHDENLYGPI
VKHISFFDFFKHKYQINIDGTVAAYRLPYLLVGDSVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLE
KLKWAKDHDEEAKKIAKAGQEFARNNLMGDDIFCYYFKLFQEYANLQVSEPQIREGMKRVEPQTEDDLFP
CTCHRKKTKDEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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