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Report for CCDS9603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9603.1 Public Homo sapiens 14 JPH4 24 110 108 CCDS HistoryNCBI Gene:84502Re-query CCDS DB by CCDS ID:9603.1Re-query CCDS DB by GeneID:84502See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356300.9 ENSP00000348648.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356300.9Link to Ensembl Protein Viewer:ENSP00000348648.4Re-query CCDS DB by Nucleotide ID:ENST00000356300Re-query CCDS DB by Protein ID:ENSP00000348648
Original member Current member EBI ENST00000397118.7 ENSP00000380307.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397118.7Link to Ensembl Protein Viewer:ENSP00000380307.3Re-query CCDS DB by Nucleotide ID:ENST00000397118Re-query CCDS DB by Protein ID:ENSP00000380307
Original member Current member NCBI NM_001146028.2 NP_001139500.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146028.2Link to Protein Sequence:NP_001139500.1Re-query CCDS DB by Nucleotide ID:NM_001146028Re-query CCDS DB by Protein ID:NP_001139500Link to BLAST:NP_001139500.1
Original member Current member NCBI NM_032452.3 NP_115828.2 Accepted alive Link to Nucleotide Sequence:NM_032452.3Link to Protein Sequence:NP_115828.2Re-query CCDS DB by Nucleotide ID:NM_032452Re-query CCDS DB by Protein ID:NP_115828Link to BLAST:NP_115828.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139500.1 628 Q96JJ6 628 100% 0 0
NP_115828.2 628 Q96JJ6 628 100% 0 0

Chromosomal Locations for CCDS 9603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23569634 23569717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23570928 23571460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23571802 23571920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23575685 23576456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23577075 23577453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGTCCCCCGGGGGCAAGTTCGACTTTGACGACGGGGGCTGCTACGTGGGGGGCTGGGAGGCGGGGCGGG
CACATGGCTACGGCGTGTGCACGGGCCCCGGCGCCCAGGGCGAGTACAGCGGCTGCTGGGCACACGGCTT
CGAGTCACTGGGCGTCTTCACGGGGCCCGGCGGACACAGCTACCAGGGCCACTGGCAGCAGGGCAAGCGC
GAAGGGCTGGGCGTGGAGCGCAAGAGCCGCTGGACGTACCGCGGCGAGTGGCTGGGCGGGCTGAAGGGGC
GCAGCGGCGTGTGGGAAAGCGTGTCCGGCCTGCGCTACGCCGGGCTCTGGAAGGACGGTTTCCAGGACGG
CTACGGCACTGAGACCTACTCCGACGGAGGCACCTACCAGGGCCAGTGGCAGGCCGGGAAGCGCCACGGC
TACGGGGTACGCCAGAGTGTGCCCTACCATCAGGCGGCGCTGCTGCGCTCGCCCCGCCGCACCTCCCTGG
ATTCCGGCCACAGCGACCCCCCGACGCCACCCCCGCCCCTGCCCTTGCCGGGCGACGAGGGAGGCAGCCC
CGCCTCGGGCTCCCGGGGCGGCTTCGTGCTGGCCGGGCCCGGGGACGCCGACGGCGCGTCGTCCCGAAAG
CGCACTCCGGCGGCCGGCGGATTCTTTCGCCGTTCGCTGCTGCTCAGCGGGCTCCGAGCGGGCGGACGTC
GCAGCTCCCTGGGCAGCAAGCGAGGCTCCCTGCGCAGCGAGGTGAGCAGCGAGGTGGGCAGCACCGGACC
GCCCGGCTCGGAGGCCAGCGGGCCCCCGGCCGCAGCGCCGCCCGCCCTCATCGAGGGCTCGGCCACAGAG
GTGTACGCGGGCGAGTGGCGCGCAGATCGGCGCAGCGGCTTCGGCGTCAGCCAGCGCTCCAACGGGCTGC
GCTACGAGGGCGAGTGGCTGGGCAACCGGCGGCACGGCTACGGGCGCACCACCCGCCCCGACGGCTCCCG
CGAGGAGGGCAAGTACAAGCGCAACCGGCTGGTGCACGGCGGGCGCGTCCGCAGTCTCCTGCCTCTGGCC
CTTCGGCGGGGCAAGGTTAAGGAGAAGGTGGACAGGGCTGTCGAGGGCGCCCGTCGAGCCGTGAGTGCTG
CCCGTCAGCGCCAGGAGATCGCCGCTGCCAGGGCAGCAGACGCCCTCCTAAAGGCAGTGGCAGCCAGCAG
TGTCGCTGAGAAGGCCGTGGAGGCAGCTCGAATGGCCAAACTGATAGCCCAGGACCTGCAGCCCATGCTA
GAGGCCCCAGGCCGCAGACCCAGGCAGGACTCAGAAGGTTCCGACACGGAGCCCCTGGATGAGGACAGCC
CTGGGGTATATGAGAACGGACTGACCCCCTCAGAGGGATCCCCTGAACTGCCCAGCAGTCCTGCCTCCTC
CCGCCAACCCTGGCGACCCCCTGCCTGCCGGAGCCCACTGCCTCCTGGAGGGGACCAGGGTCCCTTCTCC
AGCCCCAAAGCTTGGCCTGAGGAGTGGGGGGGGGCAGGCGCACAGGCAGAGGAACTAGCTGGCTATGAGG
CTGAGGATGAGGCTGGGATGCAAGGGCCAGGGCCCAGAGACGGTTCCCCACTCCTCGGAGGCTGCAGCGA
CAGTTCAGGAAGTCTTCGAGAGGAGGAGGGGGAGGATGAAGAGCCCCTGCCCCCGCTGAGGGCCCCAGCA
GGCACGGAGCCTGAGCCCATCGCCATGCTGGTCCTGAGGGGCTCGTCCTCGAGGGGTCCTGATGCTGGGT
GCCTGACAGAAGAGCTCGGGGAGCCCGCTGCAACCGAGAGGCCTGCCCAGCCGGGAGCTGCCAACCCCCT
GGTGGTGGGAGCCGTGGCCCTCCTGGACCTCAGCCTGGCATTCCTGTTCTCCCAGCTCCTCACCTGA

Translation (628 aa):
MSPGGKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWAHGFESLGVFTGPGGHSYQGHWQQGKR
EGLGVERKSRWTYRGEWLGGLKGRSGVWESVSGLRYAGLWKDGFQDGYGTETYSDGGTYQGQWQAGKRHG
YGVRQSVPYHQAALLRSPRRTSLDSGHSDPPTPPPPLPLPGDEGGSPASGSRGGFVLAGPGDADGASSRK
RTPAAGGFFRRSLLLSGLRAGGRRSSLGSKRGSLRSEVSSEVGSTGPPGSEASGPPAAAPPALIEGSATE
VYAGEWRADRRSGFGVSQRSNGLRYEGEWLGNRRHGYGRTTRPDGSREEGKYKRNRLVHGGRVRSLLPLA
LRRGKVKEKVDRAVEGARRAVSAARQRQEIAAARAADALLKAVAASSVAEKAVEAARMAKLIAQDLQPML
EAPGRRPRQDSEGSDTEPLDEDSPGVYENGLTPSEGSPELPSSPASSRQPWRPPACRSPLPPGGDQGPFS
SPKAWPEEWGGAGAQAEELAGYEAEDEAGMQGPGPRDGSPLLGGCSDSSGSLREEEGEDEEPLPPLRAPA
GTEPEPIAMLVLRGSSSRGPDAGCLTEELGEPAATERPAQPGAANPLVVGAVALLDLSLAFLFSQLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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