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Report for CCDS9660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9660.1 Public Homo sapiens 14 NKX2-8 24 110 108 CCDS HistoryNCBI Gene:26257Re-query CCDS DB by CCDS ID:9660.1Re-query CCDS DB by GeneID:26257See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9660.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258829.6 ENSP00000258829.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258829.6Link to Ensembl Protein Viewer:ENSP00000258829.4Re-query CCDS DB by Nucleotide ID:ENST00000258829Re-query CCDS DB by Protein ID:ENSP00000258829
Original member Current member NCBI NM_014360.4 NP_055175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014360.4Link to Protein Sequence:NP_055175.2Re-query CCDS DB by Nucleotide ID:NM_014360Re-query CCDS DB by Protein ID:NP_055175Link to BLAST:NP_055175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055175.2 239 O15522 239 100% 0 0

Chromosomal Locations for CCDS 9660.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 36580902 36581464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 36582233 36582389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCCACCTCTGGACGCCTGAGCTTCACCGTGCGCAGCCTTCTAGATTTACCCGAGCAGGACGCGCAAC
ACCTGCCGAGGCGGGAGCCAGAACCACGCGCCCCCCAGCCCGACCCCTGCGCCGCCTGGCTGGATTCGGA
GCGCGGCCACTACCCTTCCTCGGACGAGAGCAGCCTGGAGACCAGCCCGCCAGACTCGTCGCAGCGGCCG
TCCGCTAGGCCCGCGTCTCCGGGCTCGGACGCCGAGAAAAGGAAGAAGCGGCGGGTGCTATTCTCCAAGG
CGCAGACGCTGGAGTTGGAGCGGCGCTTCCGGCAGCAGCGGTACCTGTCTGCGCCCGAGCGCGAGCAGCT
GGCGAGCCTGCTTCGCCTCACGCCCACGCAGGTCAAGATCTGGTTCCAGAATCATCGCTACAAGCTGAAG
CGCGCTCGCGCTCCAGGGGCGGCGGAGTCGCCTGACCTGGCAGCATCCGCCGAGCTGCACGCCGCGCCCG
GCCTGCTGCGTCGCGTGGTGGTGCCGGTGCTTGTTCGCGACGGGCAGCCGTGCGGCGGCGGCGGCGGTGG
CGAGGTGGGAACCGCCGCGGCCCAGGAGAAGTGCGGCGCCCCTCCAGCCGCCGCCTGCCCTCTGCCGGGC
TACCCTGCCTTCGGTCCCGGCTCGGCGCTTGGCCTCTTCCCCGCCTACCAGCACTTAGCATCCCCCGCCC
TGGTCTCCTGGAACTGGTGA

Translation (239 aa):
MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRP
SARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLK
RARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGGGEVGTAAAQEKCGAPPAAACPLPG
YPAFGPGSALGLFPAYQHLASPALVSWNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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