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Report for CCDS9682.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9682.2 Public Homo sapiens 14 PRPF39 24 110 108 CCDS HistoryNCBI Gene:55015Re-query CCDS DB by CCDS ID:9682.2Re-query CCDS DB by GeneID:55015See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9682.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355765.11 ENSP00000348010.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355765.11Link to Ensembl Protein Viewer:ENSP00000348010.6Re-query CCDS DB by Nucleotide ID:ENST00000355765Re-query CCDS DB by Protein ID:ENSP00000348010
Original member Current member NCBI NM_017922.4 NP_060392.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017922.4Link to Protein Sequence:NP_060392.3Re-query CCDS DB by Nucleotide ID:NM_017922Re-query CCDS DB by Protein ID:NP_060392Link to BLAST:NP_060392.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060392.3 669 Q86UA1-1 669 100% 0 0

Chromosomal Locations for CCDS 9682.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45095240 45095563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45096103 45096228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45096887 45097005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45102529 45102696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45107451 45107616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45108415 45108522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45109616 45109780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45110094 45110220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45110549 45110817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45112318 45112502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45114183 45114257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45114494 45114614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45114857 45114913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGCAAAATTCTCACATGGATGAATACAGAAATTCTAGTAATGGCAGCACAGGCAACAGTTCAGAGGTAG
TGGTAGAACATCCTACTGATTTCAGTACTGAGATTATGAACGTTACAGAAATGGAACAGTCACCTGATGA
CTCTCCCAATGTGAATGCATCTACAGAAGAAACTGAAATGGCAAGTGCTGTGGACCTTCCAGTGACGCTG
ACAGAAACAGAAGCAAATTTCCCTCCAGAATATGAAAAATTTTGGAAAACTGTAGAAAATAATCCTCAGG
ATTTTACAGGCTGGGTATATTTGCTTCAATATGTAGAACAGGAGAATCACTTGATGGCTGCCAGGAAGGC
ATTTGACAGATTTTTCATACACTATCCGTATTGCTATGGTTACTGGAAAAAGTATGCAGACCTTGAAAAG
CGGCACGACAACATTAAACCATCAGATGAGGTTTATCGGCGGGGGCTTCAGGCAATACCTCTTAGTGTTG
ACCTTTGGATACATTATATAAACTTCTTAAAAGAAACATTGGACCCTGGTGATCCTGAGACAAACAATAC
AATAAGAGGAACTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTCCGTTCTGACAGACTGTGGGAA
ATGTATATAAACTGGGAAAATGAGCAGGGAAACCTGAGAGAAGTTACAGCTATATATGATCGTATTCTTG
GTATTCCAACACAGCTGTATAGTCATCATTTTCAGAGATTTAAAGAACATGTACAGAATAATTTGCCTAG
AGATCTTTTAACTGGTGAACAGTTTATTCAGTTGCGAAGGGAATTAGCTTCTGTAAATGGTCATAGTGGT
GATGATGGTCCTCCTGGTGATGATCTACCATCGGGAATTGAAGACATAACCGATCCTGCAAAGCTAATTA
CAGAAATAGAAAACATGAGACATAGAATCATTGAGATTCATCAAGAAATGTTTAATTATAATGAGCATGA
AGTTAGTAAAAGGTGGACATTTGAAGAAGGTATTAAAAGACCTTACTTTCATGTGAAACCTTTGGAAAAG
GCACAACTAAAAAACTGGAAAGAATACTTAGAATTTGAAATTGAAAATGGGACTCATGAACGAGTTGTGG
TTCTCTTTGAAAGATGTGTCATATCATGTGCCCTCTATGAGGAGTTTTGGATTAAGTATGCCAAGTACAT
GGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTGTACTATACATCTCCCAAAGAAA
CCCATGGTGCATATGCTTTGGGCAGCTTTTGAGGAACAGCAGGGTAATATTAATGAAGCCAGGAATATCT
TGAAAACATTTGAAGAATGTGTTCTAGGATTGGCAATGGTTCGTTTACGAAGAGTAAGTTTAGAACGACG
GCATGGAAATCTGGAAGAAGCTGAACATTTGCTTCAGGATGCCATTAAGAATGCCAAATCAAATAATGAA
TCTTCATTTTATGCTGTCAAACTAGCCCGGCATCTTTTCAAAATACAGAAAAACCTTCCAAAATCAAGAA
AGGTGCTTTTGGAAGCAATCGAAAGAGACAAAGAGAACACAAAGTTATACCTCAATTTACTTGAAATGGA
ATATAGTGGTGACCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTTGACAAAGCTGTACATGGTTCA
TTACCTATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGGAATTTCTTGAAGATTTTGGTTCCGATG
TTAATAAGCTTCTGAATGCTTATGATGAACATCAAACACTCCTGAAAGAACAGGATTCTTTAAAAAGGAA
AGCAGAAAATGGATCAGAAGAACCAGAGGAAAAGAAAGCACATACAGAAGATACAACTTCATCATCTACA
CAGATGATTGATGGTGATTTACAGGCAAACCAAGCTGTATATAATTATAGTGCGTGGTATCAATACAATT
ATCAGAATCCTTGGAATTATGGACAATATTATCCTCCCCCTCCAACCTGA

Translation (669 aa):
MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEMASAVDLPVTL
TETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEK
RHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWE
MYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSG
DDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEK
AQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKK
PMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNE
SSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGS
LPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSST
QMIDGDLQANQAVYNYSAWYQYNYQNPWNYGQYYPPPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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