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Report for CCDS11031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11031.1 Public Homo sapiens 17 CTNS 24 110 108 CCDS HistoryNCBI Gene:1497Re-query CCDS DB by CCDS ID:11031.1Re-query CCDS DB by GeneID:1497See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11031.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000046640.9 ENSP00000046640.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000046640.9Link to Ensembl Protein Viewer:ENSP00000046640.4Re-query CCDS DB by Nucleotide ID:ENST00000046640Re-query CCDS DB by Protein ID:ENSP00000046640
Original member Current member EBI ENST00000673965.1 ENSP00000500995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673965.1Link to Ensembl Protein Viewer:ENSP00000500995.1Re-query CCDS DB by Nucleotide ID:ENST00000673965Re-query CCDS DB by Protein ID:ENSP00000500995
Original member Current member NCBI NM_004937.3 NP_004928.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004937.3Link to Protein Sequence:NP_004928.2Re-query CCDS DB by Nucleotide ID:NM_004937Re-query CCDS DB by Protein ID:NP_004928Link to BLAST:NP_004928.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004928.2 367 O60931-1 367 100% 0 0

Chromosomal Locations for CCDS 11031.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3640207 3640267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3647444 3647522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3648847 3648931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3654998 3655101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3655221 3655352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3656487 3656586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3656676 3656795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3658005 3658175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3659858 3659975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3660236 3660369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGATAAGGAATTGGCTGACTATTTTTATCCTTTTTCCCCTGAAGCTCGTAGAGAAATGTGAGTCAAGCG
TCAGCCTCACTGTTCCTCCTGTCGTAAAGCTGGAGAACGGCAGCTCGACCAACGTCAGCCTCACCCTGCG
GCCACCATTAAATGCAACCCTGGTGATCACTTTTGAAATCACATTTCGTTCCAAAAATATTACTATCCTT
GAGCTCCCCGATGAAGTTGTGGTGCCTCCTGGAGTGACAAACTCCTCTTTTCAAGTGACATCTCAAAATG
TTGGACAACTTACTGTTTATCTACATGGAAATCACTCCAATCAGACCGGCCCGAGGATACGCTTTCTTGT
GATCCGCAGCAGCGCCATTAGCATCATAAACCAGGTGATTGGCTGGATCTACTTTGTGGCCTGGTCCATC
TCCTTCTACCCTCAGGTGATCATGAATTGGAGGCGGAAAAGTGTCATTGGTCTGAGCTTCGACTTCGTGG
CTCTGAACCTGACGGGCTTCGTGGCCTACAGTGTATTCAACATCGGCCTCCTCTGGGTGCCCTACATCAA
GGAGCAGTTTCTCCTCAAATACCCCAACGGAGTGAACCCCGTGAACAGCAACGACGTCTTCTTCAGCCTG
CACGCGGTTGTCCTCACGCTGATCATCATCGTGCAGTGCTGCCTGTATGAGCGCGGTGGCCAGCGCGTGT
CCTGGCCTGCCATCGGCTTCCTGGTGCTCGCGTGGCTCTTCGCATTTGTCACCATGATCGTGGCTGCAGT
GGGAGTGACCACGTGGCTGCAGTTTCTCTTCTGCTTCTCCTACATCAAGCTCGCAGTCACGCTGGTCAAG
TATTTTCCACAGGCCTACATGAACTTTTACTACAAAAGCACTGAGGGCTGGAGCATTGGCAACGTGCTCC
TGGACTTCACCGGGGGCAGCTTCAGCCTCCTGCAGATGTTCCTCCAGTCCTACAACAACGACCAGTGGAC
GCTGATCTTCGGAGACCCAACCAAGTTTGGACTCGGGGTCTTCTCCATCGTCTTCGACGTCGTCTTCTTC
ATCCAGCACTTCTGTTTGTACAGAAAGAGACCGGGGTATGACCAGCTGAACTAG

Translation (367 aa):
MIRNWLTIFILFPLKLVEKCESSVSLTVPPVVKLENGSSTNVSLTLRPPLNATLVITFEITFRSKNITIL
ELPDEVVVPPGVTNSSFQVTSQNVGQLTVYLHGNHSNQTGPRIRFLVIRSSAISIINQVIGWIYFVAWSI
SFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSL
HAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVK
YFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFF
IQHFCLYRKRPGYDQLN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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