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Report for CCDS11852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11852.1 Public Homo sapiens 18 GNAL 24 110 108 CCDS HistoryNCBI Gene:2774Re-query CCDS DB by CCDS ID:11852.1Re-query CCDS DB by GeneID:2774See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269162.9 ENSP00000269162.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000269162.9Link to Ensembl Protein Viewer:ENSP00000269162.4Re-query CCDS DB by Nucleotide ID:ENST00000269162Re-query CCDS DB by Protein ID:ENSP00000269162
Original member Current member EBI ENST00000423027.8 ENSP00000408489.2 MANE Plus Clinical Accepted alive Link to Ensembl Transcript Viewer:ENST00000423027.8Link to Ensembl Protein Viewer:ENSP00000408489.2Re-query CCDS DB by Nucleotide ID:ENST00000423027Re-query CCDS DB by Protein ID:ENSP00000408489
Original member Current member EBI ENST00000535121.5 ENSP00000439023.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535121.5Link to Ensembl Protein Viewer:ENSP00000439023.1Re-query CCDS DB by Nucleotide ID:ENST00000535121Re-query CCDS DB by Protein ID:ENSP00000439023
Original member Current member NCBI NM_001142339.3 NP_001135811.1 Accepted alive Link to Nucleotide Sequence:NM_001142339.3Link to Protein Sequence:NP_001135811.1Re-query CCDS DB by Nucleotide ID:NM_001142339Re-query CCDS DB by Protein ID:NP_001135811Link to BLAST:NP_001135811.1
Original member Current member NCBI NM_001261443.2 NP_001248372.1 Accepted alive Link to Nucleotide Sequence:NM_001261443.2Link to Protein Sequence:NP_001248372.1Re-query CCDS DB by Nucleotide ID:NM_001261443Re-query CCDS DB by Protein ID:NP_001248372Link to BLAST:NP_001248372.1
Original member Current member NCBI NM_001369387.1 NP_001356316.1 MANE Plus Clinical Accepted alive Link to Nucleotide Sequence:NM_001369387.1Link to Protein Sequence:NP_001356316.1Re-query CCDS DB by Nucleotide ID:NM_001369387Re-query CCDS DB by Protein ID:NP_001356316Link to BLAST:NP_001356316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135811.1 381 P38405-1 381 100% 0 0
NP_001248372.1 381 P38405-1 381 100% 0 0
NP_001356316.1 381 P38405-1 381 100% 0 0

Chromosomal Locations for CCDS 11852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11752434 11752578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11752853 11752925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11753628 11753682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11753826 11753945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11824918 11825015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11862395 11862449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11864533 11864606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11867168 11867226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11868543 11868663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11872268 11872398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11876621 11876688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 11880989 11881135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGGGTGTTTGGGCGGCAACAGCAAGACGACGGAAGACCAGGGCGTCGATGAAAAAGAACGACGCGAGG
CCAACAAAAAGATCGAGAAGCAGTTGCAGAAAGAGCGCCTGGCTTACAAGGCTACCCACCGCCTGCTGCT
CCTGGGGGCTGGTGAGTCTGGGAAAAGCACTATCGTCAAACAGATGAGGATCCTGCACGTCAATGGGTTT
AATCCCGAGGAAAAGAAACAGAAAATTCTGGACATCCGGAAAAATGTTAAAGATGCTATCGTGACAATTG
TTTCAGCAATGAGTACTATAATACCTCCAGTTCCGCTGGCCAACCCTGAAAACCAATTTCGATCAGACTA
CATCAAGAGCATAGCCCCTATCACTGACTTTGAATATTCCCAGGAATTCTTTGACCATGTGAAAAAACTT
TGGGACGATGAAGGCGTGAAGGCATGCTTTGAGAGATCCAACGAATACCAGCTGATTGACTGTGCACAAT
ACTTCCTGGAAAGAATCGACAGCGTCAGCTTGGTTGACTACACACCCACAGACCAGGACCTCCTCAGATG
CAGAGTTCTGACATCTGGGATTTTTGAGACACGATTCCAAGTGGACAAAGTAAACTTCCACATGTTTGAT
GTTGGTGGCCAGAGGGATGAGAGGAGAAAATGGATCCAGTGCTTTAACGATGTCACAGCTATCATTTACG
TCGCAGCCTGCAGTAGCTACAACATGGTGATTCGAGAAGATAACAACACCAACAGGCTGAGAGAGTCCCT
GGATCTTTTTGAAAGCATCTGGAACAACAGGTGGTTACGGACCATTTCTATCATCTTGTTCTTGAACAAA
CAAGATATGCTGGCAGAAAAAGTCTTGGCAGGGAAATCAAAAATTGAAGACTATTTCCCAGAATATGCAA
ATTATACTGTTCCTGAAGACGCAACACCAGATGCAGGAGAAGATCCCAAAGTTACAAGAGCCAAGTTCTT
TATCCGGGACCTGTTTTTGAGGATCAGCACGGCCACCGGTGACGGCAAACATTACTGCTACCCGCACTTC
ACCTGCGCCGTGGACACAGAGAACATCCGCAGGGTGTTCAACGACTGCCGCGACATCATCCAGCGGATGC
ACCTCAAGCAGTATGAGCTCTTGTGA

Translation (381 aa):
MGCLGGNSKTTEDQGVDEKERREANKKIEKQLQKERLAYKATHRLLLLGAGESGKSTIVKQMRILHVNGF
NPEEKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIAPITDFEYSQEFFDHVKKL
WDDEGVKACFERSNEYQLIDCAQYFLERIDSVSLVDYTPTDQDLLRCRVLTSGIFETRFQVDKVNFHMFD
VGGQRDERRKWIQCFNDVTAIIYVAACSSYNMVIREDNNTNRLRESLDLFESIWNNRWLRTISIILFLNK
QDMLAEKVLAGKSKIEDYFPEYANYTVPEDATPDAGEDPKVTRAKFFIRDLFLRISTATGDGKHYCYPHF
TCAVDTENIRRVFNDCRDIIQRMHLKQYELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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