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Report for CCDS11919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11919.1 Public Homo sapiens 18 MOCOS 24 110 108 CCDS HistoryNCBI Gene:55034Re-query CCDS DB by CCDS ID:11919.1Re-query CCDS DB by GeneID:55034See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261326.6 ENSP00000261326.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261326.6Link to Ensembl Protein Viewer:ENSP00000261326.4Re-query CCDS DB by Nucleotide ID:ENST00000261326Re-query CCDS DB by Protein ID:ENSP00000261326
Original member Current member NCBI NM_017947.4 NP_060417.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017947.4Link to Protein Sequence:NP_060417.4Re-query CCDS DB by Nucleotide ID:NM_017947Re-query CCDS DB by Protein ID:NP_060417Link to BLAST:NP_060417.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060417.4 888 Q96EN8 888 100% 0 0

Chromosomal Locations for CCDS 11919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36187540 36187681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36195257 36195346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36198690 36198756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36199683 36200324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36203113 36203189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36205077 36205276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36213366 36213482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36215516 36215977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36220055 36220217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36248922 36249000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36251159 36251283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36256968 36257073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36260037 36260175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36266749 36266853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36268533 36268685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGCCGGCGCGGCGGCGGAGTCAGGGCGGGAGCTGTGGACCTTCGCGGGTTCCCGGGACCCGAGCGCAC
CGCGGCTAGCCTACGGCTACGGCCCGGGCAGCCTGCGCGAGCTGCGGGCGCGCGAGTTCAGCCGCCTGGC
AGGAACTGTCTATCTTGACCATGCAGGTGCCACCTTGTTCTCCCAGAGCCAGCTCGAAAGCTTCACTAGT
GATCTCATGGAAAACACTTATGGTAATCCTCACAGCCAGAACATCAGCAGCAAGCTCACCCATGACACTG
TGGAGCAGGTGCGCTACAGAATCCTGGCGCACTTCCACACCACCGCAGAAGACTACACTGTGATCTTCAC
TGCCGGGAGCACGGCTGCTCTCAAACTGGTGGCAGAGGCCTTTCCATGGGTGTCCCAGGGCCCAGAGAGC
AGTGGGAGTCGCTTCTGTTACCTCACCGACAGCCACACCTCCGTAGTGGGTATGCGGAACGTGACCATGG
CTATAAATGTCATATCCACCCCGGTCAGGCCAGAGGACCTGTGGTCTGCAGAGGAACGTAGTGCTTCAGC
CAGCAACCCAGACTGCCAGCTGCCGCATCTCTTCTGCTACCCAGCTCAGAGTAACTTTTCTGGAGTCAGA
TACCCCCTGTCCTGGATAGAAGAGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGTGGT
TTGTGCTGCTGGATGCAGCCTCCTACGTGAGCACCTCGCCTTTGGACCTGTCAGCTCACCAGGCCGACTT
TGTCCCCATCTCCTTCTATAAGATCTTCGGGTTTCCTACAGGCCTGGGCGCTCTGCTGGTCCATAATCGT
GCGGCTCCTCTACTGAGGAAGACCTACTTTGGAGGAGGGACAGCCTCTGCGTACCTAGCAGGAGAAGACT
TCTACATCCCGAGGCAGTCGGTAGCTCAGAGGTTTGAAGATGGCACCATCTCATTCCTTGATGTTATCGC
GCTAAAACATGGATTTGACACCCTAGAGCGCCTCACAGGTGGAATGGAGAATATAAAGCAGCACACCTTC
ACCTTGGCTCAGTATACCTACGTGGCCCTGTCCTCTCTCCAGTACCCCAATGGAGCCCCTGTGGTGCGGA
TTTACAGCGATTCTGAGTTCAGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGCTGGATGA
CAAAGGGAACATCATTGGTTACTCCCAGGTGGACAAAATGGCCAGTCTTTACAACATCCACCTGCGAACT
GGCTGCTTCTGTAACACTGGGGCCTGCCAGAGGCACCTGGGCATAAGCAACGAGATGGTCAGGAAGCATT
TTCAGGCTGGTCATGTCTGTGGGGACAATATGGACCTCATAGATGGGCAGCCCACAGGATCTGTGAGGAT
TTCATTTGGATACATGTCGACGCTGGATGATGTCCAGGCCTTTCTTAGGTTCATCATAGACACTCGCCTG
CACTCATCAGGGGACTGGCCTGTCCCTCAGGCCCATGCTGACACCGGGGAGACTGGAGCCCCATCAGCAG
ACAGCCAGGCTGATGTTATACCTGCTGTCATGGGCAGACGTAGCCTCTCGCCTCAGGAAGATGCCCTCAC
AGGCTCCAGGGTTTGGAACAACTCGTCTACTGTGAATGCTGTGCCTGTGGCCCCACCTGTGTGTGATGTC
GCCAGAACCCAGCCGACTCCTTCAGAGAAAGCTGCAGGAGTCCTGGAGGGGGCCCTTGGGCCACATGTTG
TCACTAACCTTTATCTCTATCCAATCAAATCCTGTGCTGCATTTGAGGTGACCAGGTGGCCTGTAGGAAA
CCAAGGGCTGCTATATGACCGGAGCTGGATGGTTGTGAATCACAATGGTGTTTGCCTGAGTCAGAAGCAG
GAACCCCGGCTCTGCCTGATCCAGCCCTTCATCGACTTGCGGCAAAGGATCATGGTCATCAAAGCCAAAG
GGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTG
TGCTGACAGAGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGTTGTCAACATTTTTTGGCCGT
CCTTGTCATTTGATCAAACAAAGTTCAAACTCTCAAAGGAATGCAAAGAAGAAACATGGAAAAGATCAAC
TTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTAT
TTTGGAACTTCACCGGCAACTAAACACCAGTGATGAGAATGGAAAGGAGGAATTATTCTCACTGAAGGAT
CTCAGCTTGCGTTTTCGTGCCAATATTATTATCAATGGAAAAAGGGCTTTTGAAGAAGAGAAATGGGATG
AGATTTCAATTGGCTCTTTGCGTTTCCAGGTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGA
CCAGCAAACTGGGCAACGAAACCAGCATGTTTTCCAAAAACTTTCTGAGAGTCGTGAAACAAAGGTGAAC
TTTGGCATGTACCTGATGCATGCATCATTGGATTTATCCTCCCCATGTTTCCTGTCTGTAGGATCTCAGG
TGCTCCCTGTGTTGAAAGAGAATGTGGAAGGTCATGATTTACCTGCATCTGAGAAACACCAGGATGTTAC
CTCCTAA

Translation (888 aa):
MAGAAAESGRELWTFAGSRDPSAPRLAYGYGPGSLRELRAREFSRLAGTVYLDHAGATLFSQSQLESFTS
DLMENTYGNPHSQNISSKLTHDTVEQVRYRILAHFHTTAEDYTVIFTAGSTAALKLVAEAFPWVSQGPES
SGSRFCYLTDSHTSVVGMRNVTMAINVISTPVRPEDLWSAEERSASASNPDCQLPHLFCYPAQSNFSGVR
YPLSWIEEVKSGRLHPVSTPGKWFVLLDAASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALLVHNR
AAPLLRKTYFGGGTASAYLAGEDFYIPRQSVAQRFEDGTISFLDVIALKHGFDTLERLTGGMENIKQHTF
TLAQYTYVALSSLQYPNGAPVVRIYSDSEFSSPEVQGPIINFNVLDDKGNIIGYSQVDKMASLYNIHLRT
GCFCNTGACQRHLGISNEMVRKHFQAGHVCGDNMDLIDGQPTGSVRISFGYMSTLDDVQAFLRFIIDTRL
HSSGDWPVPQAHADTGETGAPSADSQADVIPAVMGRRSLSPQEDALTGSRVWNNSSTVNAVPVAPPVCDV
ARTQPTPSEKAAGVLEGALGPHVVTNLYLYPIKSCAAFEVTRWPVGNQGLLYDRSWMVVNHNGVCLSQKQ
EPRLCLIQPFIDLRQRIMVIKAKGMEPIEVPLEENSERTQIRQSRVCADRVSTYDCGEKISSWLSTFFGR
PCHLIKQSSNSQRNAKKKHGKDQLPGTMATLSLVNEAQYLLINTSSILELHRQLNTSDENGKEELFSLKD
LSLRFRANIIINGKRAFEEEKWDEISIGSLRFQVLGPCHRCQMICIDQQTGQRNQHVFQKLSESRETKVN
FGMYLMHASLDLSSPCFLSVGSQVLPVLKENVEGHDLPASEKHQDVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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