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Report for CCDS11924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11924.1 Public Homo sapiens 18 SLC14A2 24 110 108 CCDS HistoryNCBI Gene:8170Re-query CCDS DB by CCDS ID:11924.1Re-query CCDS DB by GeneID:8170See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11924.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255226.11 ENSP00000255226.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255226.11Link to Ensembl Protein Viewer:ENSP00000255226.5Re-query CCDS DB by Nucleotide ID:ENST00000255226Re-query CCDS DB by Protein ID:ENSP00000255226
Original member Current member EBI ENST00000586448.5 ENSP00000465953.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586448.5Link to Ensembl Protein Viewer:ENSP00000465953.1Re-query CCDS DB by Nucleotide ID:ENST00000586448Re-query CCDS DB by Protein ID:ENSP00000465953
Original member Current member NCBI NM_001242692.2 NP_001229621.1 Accepted alive Link to Nucleotide Sequence:NM_001242692.2Link to Protein Sequence:NP_001229621.1Re-query CCDS DB by Nucleotide ID:NM_001242692Re-query CCDS DB by Protein ID:NP_001229621Link to BLAST:NP_001229621.1
Original member Current member NCBI NM_001371319.1 NP_001358248.1 Accepted alive Link to Nucleotide Sequence:NM_001371319.1Link to Protein Sequence:NP_001358248.1Re-query CCDS DB by Nucleotide ID:NM_001371319Re-query CCDS DB by Protein ID:NP_001358248Link to BLAST:NP_001358248.1
Original member Current member NCBI NM_007163.4 NP_009094.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007163.4Link to Protein Sequence:NP_009094.3Re-query CCDS DB by Nucleotide ID:NM_007163Re-query CCDS DB by Protein ID:NP_009094Link to BLAST:NP_009094.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229621.1 920 Q15849-1 920 100% 0 0
NP_001358248.1 920 Q15849-1 920 100% 0 0
NP_009094.3 920 Q15849-1 920 100% 0 0

Chromosomal Locations for CCDS 11924.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45624665 45624814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45625683 45625863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45626958 45627147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45632350 45632478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45636990 45637182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45639746 45639893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45641209 45641343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45643132 45643181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45643986 45644160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45663785 45663907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45666137 45666219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45666935 45667094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45667833 45668022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45668349 45668477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45669306 45669498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45672900 45673047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45673683 45673817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45678975 45679024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45682319 45682519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGTCTGACCCCCACAGCAGTCCTCTCCTGCCAGAGCCACTTTCCAGCAGATACAAACTCTACGAGGCAG
AGTTTACCAGCCCGAGCTGGCCCTCGACATCCCCGGATACTCACCCAGCTCTGCCCCTCCTGGAAATGCC
TGAAGAAAAGGATCTCCGGTCTTCCAATGAAGACAGTCACATTGTGAAGATCGAAAAGCTCAATGAAAGG
AGTAAAAGGAAAGACGACGGGGTGGCCCATCGGGACTCAGCAGGCCAAAGGTGCATCTGCCTCTCCAAAG
CAGTGGGCTACCTCACGGGCGACATGAAGGAGTACAGGATCTGGCTGAAAGACAAGCACCTTGCCCTCCA
GTTCATAGACTGGGTCCTGAGAGGGACCGCTCAGGTGATGTTCATCAACAATCCTCTCAGCGGCCTCATC
ATCTTCATAGGGCTGCTGATCCAGAATCCCTGGTGGACAATCACTGGGGGCCTGGGGACAGTGGTCTCGA
CCTTAACAGCTCTCGCCTTGGGCCAAGACAGGTCTGCCATTGCCTCAGGACTCCATGGGTACAACGGGAT
GCTGGTGGGACTGCTGATGGCCGTGTTCTCGGAGAAGTTAGACTACTACTGGTGGCTTCTGTTTCCTGTG
ACCTTCACAGCCATGTCCTGCCCAGTTCTTTCTAGTGCCTTGAATTCCATCTTCAGCAAGTGGGACCTCC
CGGTCTTCACTCTGCCCTTCAACATTGCAGTCACCTTGTACCTTGCAGCCACAGGCCACTACAACCTCTT
CTTCCCCACAACACTGGTAGAGCCTGTGTCTTCAGTGCCCAATATCACCTGGACAGAGATGGAAATGCCC
CTGCTGTTACAAGCCATCCCTGTTGGGGTCGGCCAGGTGTATGGCTGTGACAATCCCTGGACAGGCGGCG
TGTTCCTGGTGGCTCTGTTCATCTCCTCGCCACTCATCTGCTTGCATGCAGCCATTGGCTCAATCGTGGG
GCTGCTAGCAGCCCTGTCAGTGGCCACACCCTTCGAGACCATCTACACAGGCCTCTGGAGCTACAACTGC
GTCCTCTCCTGCATCGCCATCGGAGGCATGTTCTATGCCCTCACCTGGCAGACTCACCTGCTGGCCCTCA
TCTGTGCCCTGTTCTGTGCATACATGGAAGCAGCCATCTCCAACATCATGTCAGTGGTGGGCGTGCCACC
AGGCACCTGGGCCTTCTGCCTTGCCACCATCATCTTCCTGCTCCTGACGACAAACAACCCAGCCATCTTC
AGACTCCCACTCAGCAAAGTCACCTACCCCGAGGCCAACCGCATCTACTACCTGACAGTGAAAAGCGGTG
AAGAAGAGAAGGCCCCCAGCGGAGGCGGTGGGGAGCATCCACCCACAGCAGGCCCAAAGGTGGAGGAGGG
CTCGGAGGCTGTGCTCTCCAAGCACAGGAGTGTATTTCACATCGAGTGGTCATCCATTCGGAGGAGGAGC
AAAGTGTTTGGAAAAGGCGAACACCAGGAAAGACAAAACAAAGACCCATTTCCCTATCGATACCGGAAGC
CCACAGTCGAGCTGCTTGATCTGGACACCATGGAGGAGAGCTCTGAGATAAAAGTGGAAACAAACATTTC
CAAGACATCCTGGATTCGGAGTTCCATGGCTGCCAGTGGGAAAAGGGTCAGCAAAGCCCTCAGCTACATC
ACAGGAGAGATGAAGGAGTGTGGAGAGGGACTTAAAGACAAGTCCCCAGTGTTCCAGTTCTTTGACTGGG
TCCTCCGAGGCACATCTCAAGTGATGTTTGTGAACAACCCCCTCAGCGGCATCCTCATCATCCTCGGCCT
CTTCATCCAGAACCCCTGGTGGGCGATCTCAGGCTGCCTGGGTACCATCATGTCCACCTTGACAGCCCTC
ATCCTGAGTCAGGACAAGTCGGCCATCGCTGCAGGATTTCACGGCTACAATGGGGTGCTGGTGGGGCTGC
TGATGGCCGTGTTCTCAGACAAAGGTGACTACTACTGGTGGCTGTTGCTACCCGTCATCATCATGTCCAT
GTCTTGCCCCATCCTCTCCAGTGCCCTGGGTACCATCTTCAGCAAGTGGGACCTCCCAGTCTTCACACTG
CCCTTCAATATCACTGTGACTTTGTACCTGGCAGCCACGGGCCACTACAACCTTTTCTTCCCCACAACGC
TGCTGCAGCCTGCATCCGCCATGCCCAACATCACCTGGTCAGAGGTCCAAGTGCCCTTGCTTTTGAGAGC
CATCCCCGTTGGAATTGGCCAAGTGTACGGCTGTGATAACCCCTGGACTGGAGGCATCTTCCTCATAGCT
CTGTTCATATCCTCACCTCTCATTTGCTTGCATGCAGCAATTGGATCCACCATGGGGATGCTAGCAGCAC
TCACTATTGCGACGCCCTTTGACTCCATCTACTTCGGCCTGTGTGGCTTCAACAGCACCCTCGCATGCAT
AGCGATAGGAGGCATGTTCTACGTCATCACCTGGCAGACGCACCTCCTCGCCATCGCCTGCGCACTGTTT
GCTGCCTACCTGGGTGCTGCCCTGGCTAACATGTTATCTGTGTTTGGATTGCCGCCCTGCACTTGGCCCT
TCTGTCTCTCAGCTCTCACCTTCCTGCTCCTGACGACCAATAACCCCGCCATCTACAAGCTCCCGCTCAG
CAAAGTCACCTACCCAGAGGCCAACCGCATCTACTACCTGTCCCAGGAGAGAAACAGAAGGGCATCAATC
ATAACAAAGTATCAGGCCTACGATGTCTCCTAA

Translation (920 aa):
MSDPHSSPLLPEPLSSRYKLYEAEFTSPSWPSTSPDTHPALPLLEMPEEKDLRSSNEDSHIVKIEKLNER
SKRKDDGVAHRDSAGQRCICLSKAVGYLTGDMKEYRIWLKDKHLALQFIDWVLRGTAQVMFINNPLSGLI
IFIGLLIQNPWWTITGGLGTVVSTLTALALGQDRSAIASGLHGYNGMLVGLLMAVFSEKLDYYWWLLFPV
TFTAMSCPVLSSALNSIFSKWDLPVFTLPFNIAVTLYLAATGHYNLFFPTTLVEPVSSVPNITWTEMEMP
LLLQAIPVGVGQVYGCDNPWTGGVFLVALFISSPLICLHAAIGSIVGLLAALSVATPFETIYTGLWSYNC
VLSCIAIGGMFYALTWQTHLLALICALFCAYMEAAISNIMSVVGVPPGTWAFCLATIIFLLLTTNNPAIF
RLPLSKVTYPEANRIYYLTVKSGEEEKAPSGGGGEHPPTAGPKVEEGSEAVLSKHRSVFHIEWSSIRRRS
KVFGKGEHQERQNKDPFPYRYRKPTVELLDLDTMEESSEIKVETNISKTSWIRSSMAASGKRVSKALSYI
TGEMKECGEGLKDKSPVFQFFDWVLRGTSQVMFVNNPLSGILIILGLFIQNPWWAISGCLGTIMSTLTAL
ILSQDKSAIAAGFHGYNGVLVGLLMAVFSDKGDYYWWLLLPVIIMSMSCPILSSALGTIFSKWDLPVFTL
PFNITVTLYLAATGHYNLFFPTTLLQPASAMPNITWSEVQVPLLLRAIPVGIGQVYGCDNPWTGGIFLIA
LFISSPLICLHAAIGSTMGMLAALTIATPFDSIYFGLCGFNSTLACIAIGGMFYVITWQTHLLAIACALF
AAYLGAALANMLSVFGLPPCTWPFCLSALTFLLLTTNNPAIYKLPLSKVTYPEANRIYYLSQERNRRASI
ITKYQAYDVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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