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Report for CCDS13046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13046.1 Public Homo sapiens 20 UBOX5 24 110 108 CCDS HistoryNCBI Gene:22888Re-query CCDS DB by CCDS ID:13046.1Re-query CCDS DB by GeneID:22888See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217173.7 ENSP00000217173.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217173.7Link to Ensembl Protein Viewer:ENSP00000217173.2Re-query CCDS DB by Nucleotide ID:ENST00000217173Re-query CCDS DB by Protein ID:ENSP00000217173
Original member Current member NCBI NM_014948.4 NP_055763.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014948.4Link to Protein Sequence:NP_055763.1Re-query CCDS DB by Nucleotide ID:NM_014948Re-query CCDS DB by Protein ID:NP_055763Link to BLAST:NP_055763.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055763.1 541 O94941-1 541 100% 0 0

Chromosomal Locations for CCDS 13046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3110106 3110314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3115305 3115466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3121384 3122584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3123312 3123365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGTAATAAATCTTTGCCTCCCACAGTTCAGACCAAGAATTCACTGCAACAAGATATCAGCTGATGGTT
ACGAAGTAGAAAATCTCATCTCTGAAGATCTCACAAAGAGAAGTCATGGTTTCAGGACAGAGTATTTCAT
TAAGCCACCAGTCTATGTGACAGTTTCATTTCCCTTTAATGTGGAAATCTGTAGGATCAACATAGACCTC
ACAGCTGGGGGAGGTCAGAACGTCACTGGCCTGGAAATGTACACATCTGCCTCATCTAGCAGAGTGTCTT
GGAATACGCCCCAGTGCCGGACCCTGGGCCCAGCTGAGCCATCTGTCCCAGACAAGGAGGCGTTCACCTT
GGTAGGCAAAGTCTTACTGAAAAACCAGAGCCAAGTGGTGTTTAGCCACAGGGGCTTCAAGGCCAGGCCC
CCTTTTGGCGCGATGGAAGCCACACTCCCCTCCCCTGCTGTTGTGGCCCAGGAGCTCTGGAATAAAGGGG
CTCTTTCCCTTAGCCACGTGGCCCACTTAAGGATCTGTATCACCCATGTGACAGGCGGCGGTATCCCTTG
TATCAAGCGGTTGGAAGTGTGGGGTCAGCCGGCCAAGACCTGCTCCCAGGAAGTGATAGACAGCATCCTG
CTGGTCACCTCAGAGAACCTGCCTCAGGATGTGGCTCTGCAGGCTCCAGCCTTGCCCATGGAAAGTGACT
GTGACCCTGGGGACCAGCCTGAGAGCCAGCAGGCTCCCTCCAGCCTGCAGAAGCTGGCCGAGATCATTCA
GGATGTGCCTGAGGAGTTCCTGGATCCCATCACCCTGGAGATCATGCCTTGTCCCATGCTGCTGCCCTCA
GGCAAGGTCATCGACCAGAGCACACTGGAGAAGTGTAACCGCAGTGAAGCCACATGGGGCCGAGTGCCCA
GTGACCCTTTCACGGGGGTAGCTTTTACTCCGCACTCTCAGCCCCTGCCTCACCCCTCCCTCAAGGCCCG
GATTGACCATTTCCTGCTCCAGCACTCCATCCCTGGCTGCCACCTGCTTGGGAGAGCACAGACGGCATTG
GCAGTGATCCCTTCTTCCATTGTTCTGCCCTCTCAGAAAAGGAAGATAGAGCAGGCTGAACATGTCCCAG
ACAGTAACTTTGGTGTAAATGCTTCCTGTTTTTCTGCCACAAGCCCTTTGGTCTTACCCACTACCTCAGA
GCACACTGCTAAGAAAATGAAAGCCACCAATGAGCCCAGCCTGACACATATGGACTGCTCGACAGGTCCA
CTGTCCCACGAGCAGAAGCTGTCACAAAGCTTGGAAATTGCCTTGGCATCCACCCTTGGCTCTATGCCCT
CCTTCACGGCACGGCTGACCAGGGGACAGCTCCAGCACCTTGGCACAAGAGGGAGCAACACTTCCTGGAG
GCCTGGCACCGGCTCGGAGCAGCCTGGGAGCATCCTGGGCCCCGAATGTGCCTCCTGCAAAAGAGTATTT
TCTCCCTACTTCAAAAAGGAGCCGGTGTACCAGCTGCCCTGCGGCCACCTCCTGTGCCGACCCTGCCTGG
GTGAGAAGCAACGCTCCCTGCCCATGACGTGCACAGCCTGCCAGCGGCCGGTTGCTAGCCAAGACGTGCT
GCGGGTCCACTTCTGA

Translation (541 aa):
MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFNVEICRINIDL
TAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGKVLLKNQSQVVFSHRGFKARP
PFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSIL
LVTSENLPQDVALQAPALPMESDCDPGDQPESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPS
GKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTAL
AVIPSSIVLPSQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILGPECASCKRVF
SPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVHF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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