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Report for CCDS13703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13703.1 Public Homo sapiens 21 AGPAT3 24 110 108 CCDS HistoryNCBI Gene:56894Re-query CCDS DB by CCDS ID:13703.1Re-query CCDS DB by GeneID:56894See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13703.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291572.13 ENSP00000291572.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291572.13Link to Ensembl Protein Viewer:ENSP00000291572.8Re-query CCDS DB by Nucleotide ID:ENST00000291572Re-query CCDS DB by Protein ID:ENSP00000291572
Original member Current member EBI ENST00000327505.6 ENSP00000332989.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327505.6Link to Ensembl Protein Viewer:ENSP00000332989.2Re-query CCDS DB by Nucleotide ID:ENST00000327505Re-query CCDS DB by Protein ID:ENSP00000332989
Original member Current member EBI ENST00000398058.5 ENSP00000381135.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398058.5Link to Ensembl Protein Viewer:ENSP00000381135.1Re-query CCDS DB by Nucleotide ID:ENST00000398058Re-query CCDS DB by Protein ID:ENSP00000381135
Original member Current member EBI ENST00000398061.5 ENSP00000381138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398061.5Link to Ensembl Protein Viewer:ENSP00000381138.1Re-query CCDS DB by Nucleotide ID:ENST00000398061Re-query CCDS DB by Protein ID:ENSP00000381138
Original member Current member EBI ENST00000398063.6 ENSP00000381140.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398063.6Link to Ensembl Protein Viewer:ENSP00000381140.2Re-query CCDS DB by Nucleotide ID:ENST00000398063Re-query CCDS DB by Protein ID:ENSP00000381140
Original member Current member EBI ENST00000546158.1 ENSP00000443510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546158.1Link to Ensembl Protein Viewer:ENSP00000443510.1Re-query CCDS DB by Nucleotide ID:ENST00000546158Re-query CCDS DB by Protein ID:ENSP00000443510
Original member Current member NCBI NM_001037553.2 NP_001032642.1 Accepted alive Link to Nucleotide Sequence:NM_001037553.2Link to Protein Sequence:NP_001032642.1Re-query CCDS DB by Nucleotide ID:NM_001037553Re-query CCDS DB by Protein ID:NP_001032642Link to BLAST:NP_001032642.1
Original member Current member NCBI NM_001369878.1 NP_001356807.1 Accepted alive Link to Nucleotide Sequence:NM_001369878.1Link to Protein Sequence:NP_001356807.1Re-query CCDS DB by Nucleotide ID:NM_001369878Re-query CCDS DB by Protein ID:NP_001356807Link to BLAST:NP_001356807.1
Original member Current member NCBI NM_001369880.1 NP_001356809.1 Accepted alive Link to Nucleotide Sequence:NM_001369880.1Link to Protein Sequence:NP_001356809.1Re-query CCDS DB by Nucleotide ID:NM_001369880Re-query CCDS DB by Protein ID:NP_001356809Link to BLAST:NP_001356809.1
Original member Current member NCBI NM_020132.5 NP_064517.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020132.5Link to Protein Sequence:NP_064517.1Re-query CCDS DB by Nucleotide ID:NM_020132Re-query CCDS DB by Protein ID:NP_064517Link to BLAST:NP_064517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032642.1 376 Q9NRZ7-1 376 100% 0 0
NP_001356807.1 376 Q9NRZ7-1 376 100% 0 0
NP_001356809.1 376 Q9NRZ7-1 376 100% 0 0
NP_064517.1 376 Q9NRZ7-1 376 100% 0 0

Chromosomal Locations for CCDS 13703.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43959682 43959859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43967946 43968115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43969118 43969279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43970653 43970806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43971388 43971490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43978046 43978121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43980989 43981187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43982304 43982392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGGCCTGCTGGCCTTCCTGAAGACCCAGTTCGTGCTGCACCTGCTGGTCGGCTTTGTCTTCGTGGTGA
GTGGTCTGGTCATCAACTTCGTCCAGCTGTGCACGCTGGCGCTCTGGCCGGTCAGCAAGCAGCTCTACCG
CCGCCTCAACTGCCGCCTCGCCTACTCACTCTGGAGCCAACTGGTCATGCTGCTGGAGTGGTGGTCCTGC
ACGGAGTGTACACTGTTCACGGACCAGGCCACGGTAGAGCGCTTTGGGAAGGAGCACGCAGTCATCATCC
TCAACCACAACTTCGAGATCGACTTCCTCTGTGGGTGGACCATGTGTGAGCGCTTCGGAGTGCTGGGGAG
CTCCAAGGTCCTCGCTAAGAAGGAGCTGCTCTACGTGCCCCTCATCGGCTGGACGTGGTACTTTCTGGAG
ATTGTGTTCTGCAAGCGGAAGTGGGAGGAGGACCGGGACACCGTGGTCGAAGGGCTGAGGCGCCTGTCGG
ACTACCCCGAGTACATGTGGTTTCTCCTGTACTGCGAGGGGACGCGCTTCACGGAGACCAAGCACCGCGT
TAGCATGGAGGTGGCGGCTGCTAAGGGGCTTCCTGTCCTCAAGTACCACCTGCTGCCGCGGACCAAGGGC
TTCACCACCGCAGTCAAGTGCCTCCGGGGGACAGTCGCAGCTGTCTATGATGTAACCCTGAACTTCAGAG
GAAACAAGAACCCGTCCCTGCTGGGGATCCTCTACGGGAAGAAGTACGAGGCGGACATGTGCGTGAGGAG
ATTTCCTCTGGAAGACATCCCGCTGGATGAAAAGGAAGCAGCTCAGTGGCTTCATAAACTGTACCAGGAG
AAGGACGCGCTCCAGGAGATATATAATCAGAAGGGCATGTTTCCAGGGGAGCAGTTTAAGCCTGCCCGGA
GGCCGTGGACCCTCCTGAACTTCCTGTCCTGGGCCACCATTCTCCTGTCTCCCCTCTTCAGTTTTGTCTT
GGGCGTCTTTGCCAGCGGATCACCTCTCCTGATCCTGACTTTCTTGGGGTTTGTGGGAGCAGCTTCCTTT
GGAGTTCGCAGACTGATAGGAGTAACTGAGATAGAAAAAGGCTCCAGCTACGGAAACCAAGAGTTTAAGA
AAAAGGAATAA

Translation (376 aa):
MGLLAFLKTQFVLHLLVGFVFVVSGLVINFVQLCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSC
TECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKKELLYVPLIGWTWYFLE
IVFCKRKWEEDRDTVVEGLRRLSDYPEYMWFLLYCEGTRFTETKHRVSMEVAAAKGLPVLKYHLLPRTKG
FTTAVKCLRGTVAAVYDVTLNFRGNKNPSLLGILYGKKYEADMCVRRFPLEDIPLDEKEAAQWLHKLYQE
KDALQEIYNQKGMFPGEQFKPARRPWTLLNFLSWATILLSPLFSFVLGVFASGSPLLILTFLGFVGAASF
GVRRLIGVTEIEKGSSYGNQEFKKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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