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Report for CCDS14271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14271.1 Public Homo sapiens X JADE3 24 110 108 CCDS HistoryNCBI Gene:9767Re-query CCDS DB by CCDS ID:14271.1Re-query CCDS DB by GeneID:9767See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611250.4 ENSP00000479377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611250.4Link to Ensembl Protein Viewer:ENSP00000479377.1Re-query CCDS DB by Nucleotide ID:ENST00000611250Re-query CCDS DB by Protein ID:ENSP00000479377
Original member Current member EBI ENST00000614628.5 ENSP00000481850.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614628.5Link to Ensembl Protein Viewer:ENSP00000481850.1Re-query CCDS DB by Nucleotide ID:ENST00000614628Re-query CCDS DB by Protein ID:ENSP00000481850
Original member Current member NCBI NM_001077445.3 NP_001070913.1 Accepted alive Link to Nucleotide Sequence:NM_001077445.3Link to Protein Sequence:NP_001070913.1Re-query CCDS DB by Nucleotide ID:NM_001077445Re-query CCDS DB by Protein ID:NP_001070913Link to BLAST:NP_001070913.1
Original member Current member NCBI NM_014735.5 NP_055550.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014735.5Link to Protein Sequence:NP_055550.1Re-query CCDS DB by Nucleotide ID:NM_014735Re-query CCDS DB by Protein ID:NP_055550Link to BLAST:NP_055550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070913.1 823 Q92613 823 100% 0 0
NP_055550.1 823 Q92613 823 100% 0 0

Chromosomal Locations for CCDS 14271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 46984895 46984940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46985713 46985792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 46998120 46998277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47024724 47024914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47027892 47028103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47033621 47033788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47038949 47039065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47054158 47054628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47056082 47056199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47058167 47059077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGAAACGCCATAGGCCTGTCAGCAGCAGTGACAGTTCAGACGAAAGTCCTTCCACTTCCTTTACTTCTG
GCTCAATGTATAGGATCAAGTCAAAAATTCCAAATGAACACAAGAAACCTGCTGAGGTATTCCGGAAGGA
CCTCATCAGTGCCATGAAACTTCCAGATTCTCACCACATTAATCCTGATAGCTATTACCTCTTTGCTGAT
ACATGGAAGGAAGAATGGGAAAAGGGAGTCCAGGTACCAGCCAGTCCAGACACCGTTCCACAGCCTTCTC
TCAGGATTATAGCTGAGAAGGTAAAGGACGTTCTGTTTATCCGACCCCGGAAGTATATTCACTGCTCCAG
CCCAGACACCACAGAGCCTGGCTACATCAACATCATGGAGTTGGCAGCATCTGTTTGCCGCTATGACCTA
GATGACATGGACATCTTCTGGCTTCAGGAACTCAATGAAGACCTTGCAGAAATGGGTTGTGGGCCAGTTG
ATGAGAATCTTATGGAAAAGACAGTAGAAGTCCTGGAACGCCATTGCCATGAAAATATGAACCATGCTAT
TGAGACAGAGGAAGGGCTAGGCATAGAGTATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCAGAC
AGTGAAGAAGGGAATGATATGGTGTTCTGTGATAAGTGTAACGTCTGTGTGCATCAGGCCTGCTATGGCA
TCCTCAAGGTCCCAGAAGGCAGCTGGCTGTGTCGCTCCTGTGTCCTGGGCATTTATCCGCAATGTGTGTT
ATGTCCAAAGAAAGGTGGAGCCCTGAAGACCACCAAGACAGGGACTAAATGGGCTCATGTCAGCTGTGCC
CTGTGGATCCCAGAGGTCAGCATTGCTTGTCCTGAGAGGATGGAACCGATCACGAAGATCTCCCACATCC
CACCCAGTCGGTGGGCCTTAGTCTGCAACTTGTGCAAGTTGAAGACGGGGGCTTGTATTCAGTGCTCTAT
AAAAAGCTGCATCACTGCCTTCCACGTCACCTGTGCCTTTGAGCACGGCCTAGAGATGAAGACCATCCTA
GATGAGGGAGACGAAGTGAAGTTCAAGTCATATTGCCTCAAGCATAGCCAAAACAGGCAGAAACTTGGAG
AAGCTGAGTACCCCCACCACAGGGCTAAAGAGCAGAGCCAGGCCAAAAGTGAGAAAACCAGCCTGCGGGC
ACAGAAGCTTCGGGAGCTGGAGGAGGAGTTCTATTCCTTGGTACGAGTGGAAGATGTGGCCGCAGAGCTG
GGTATGCCCACGCTAGCTGTGGACTTTATCTATAACTACTGGAAACTGAAGCGGAAAAGTAACTTCAATA
AGCCATTATTTCCTCCAAAGGAGGATGAAGAAAATGGGCTGGTGCAGCCAAAAGAGGAAAGCATTCACAC
TCGAATGAGAATGTTTATGCATCTACGCCAGGACCTGGAGAGGGTCCGAAATCTGTGCTATATGATAAGC
AGACGAGAGAAGCTGAAGCTGTCACACAACAAAATACAGGAACAGATCTTCGGTTTGCAAGTCCAGCTTC
TTAACCAAGAAATTGATGCAGGGCTTCCTTTGACAAATGCACTTGAAAACTCACTGTTTTACCCACCACC
AAGAATTACCTTGAAGTTAAAAATGCCCAAATCAACCCCAGAAGACCACAGAAACAGCTCCACAGAAACC
GATCAGCAGCCCCACTCTCCTGACAGCAGCTCATCTGTTCACAGTATAAGGAACATGCAGGTGCCTCAGG
AGTCACTAGAAATGAGAACAAAATCGTATCCGAGATACCCACTAGAGAGCAAGAATAACCGTTTGCTGGC
CAGTCTCAGCCATTCTAGGAGTGAAGCAAAGGAGTCCAGTCCTGCTTGGAGAACCCCGTCCTCGGAGTGC
TATCATGGGCAGTCACTGGGAAAGCCTCTGGTCCTTCAGGCTGCCCTCCATGGACAGTCTTCCATTGGGA
ATGGGAAAAGTCAGCCTAACTCCAAGTTTGCCAAATCCAATGGCCTGGAGGGCAGCTGGTCTGGGAATGT
CACCCAAAAAGACAGCTCGAGTGAGATGTTCTGTGACCAGGAGCCTGTGTTCAGCCCCCACTTGGTCAGT
CAGGGCAGCTTTAGAAAATCCACTGTAGAACACTTTAGTAGGTCCTTTAAAGAGACCACCAATAGGTGGG
TGAAGAACACAGAGGACCTCCAGTGCTATGTGAAGCCAACCAAGAATATGAGCCCCAAGGAGCAGTTCTG
GGGTAGACAGGTTCTCAGGCGGTCTGCAGGGAGAGCTCCATATCAGGAAAATGATGGCTATTGCCCAGAT
TTGGAGCTGAGTGATTCAGAGGCAGAAAGTGATGGGAATAAAGAAAAAGTCAGGGTAAGGAAAGATAGCT
CAGACAGGGAAAATCCTCCCCATGACTCTAGACGGGATTGCCATGGTAAAAGCAAGACACATCCCCTTTC
CCACAGTTCAATGCAAAGGTGA

Translation (823 aa):
MKRHRPVSSSDSSDESPSTSFTSGSMYRIKSKIPNEHKKPAEVFRKDLISAMKLPDSHHINPDSYYLFAD
TWKEEWEKGVQVPASPDTVPQPSLRIIAEKVKDVLFIRPRKYIHCSSPDTTEPGYINIMELAASVCRYDL
DDMDIFWLQELNEDLAEMGCGPVDENLMEKTVEVLERHCHENMNHAIETEEGLGIEYDEDVICDVCRSPD
SEEGNDMVFCDKCNVCVHQACYGILKVPEGSWLCRSCVLGIYPQCVLCPKKGGALKTTKTGTKWAHVSCA
LWIPEVSIACPERMEPITKISHIPPSRWALVCNLCKLKTGACIQCSIKSCITAFHVTCAFEHGLEMKTIL
DEGDEVKFKSYCLKHSQNRQKLGEAEYPHHRAKEQSQAKSEKTSLRAQKLRELEEEFYSLVRVEDVAAEL
GMPTLAVDFIYNYWKLKRKSNFNKPLFPPKEDEENGLVQPKEESIHTRMRMFMHLRQDLERVRNLCYMIS
RREKLKLSHNKIQEQIFGLQVQLLNQEIDAGLPLTNALENSLFYPPPRITLKLKMPKSTPEDHRNSSTET
DQQPHSPDSSSSVHSIRNMQVPQESLEMRTKSYPRYPLESKNNRLLASLSHSRSEAKESSPAWRTPSSEC
YHGQSLGKPLVLQAALHGQSSIGNGKSQPNSKFAKSNGLEGSWSGNVTQKDSSSEMFCDQEPVFSPHLVS
QGSFRKSTVEHFSRSFKETTNRWVKNTEDLQCYVKPTKNMSPKEQFWGRQVLRRSAGRAPYQENDGYCPD
LELSDSEAESDGNKEKVRVRKDSSDRENPPHDSRRDCHGKSKTHPLSHSSMQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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