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Report for CCDS2018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2018.1 Public Homo sapiens 2 TMEM127 24 110 108 CCDS HistoryNCBI Gene:55654Re-query CCDS DB by CCDS ID:2018.1Re-query CCDS DB by GeneID:55654See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258439.8 ENSP00000258439.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258439.8Link to Ensembl Protein Viewer:ENSP00000258439.3Re-query CCDS DB by Nucleotide ID:ENST00000258439Re-query CCDS DB by Protein ID:ENSP00000258439
Original member Current member EBI ENST00000432959.1 ENSP00000416660.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432959.1Link to Ensembl Protein Viewer:ENSP00000416660.1Re-query CCDS DB by Nucleotide ID:ENST00000432959Re-query CCDS DB by Protein ID:ENSP00000416660
Original member Current member NCBI NM_001193304.3 NP_001180233.1 Accepted alive Link to Nucleotide Sequence:NM_001193304.3Link to Protein Sequence:NP_001180233.1Re-query CCDS DB by Nucleotide ID:NM_001193304Re-query CCDS DB by Protein ID:NP_001180233Link to BLAST:NP_001180233.1
Original member Current member NCBI NM_017849.4 NP_060319.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017849.4Link to Protein Sequence:NP_060319.1Re-query CCDS DB by Nucleotide ID:NM_017849Re-query CCDS DB by Protein ID:NP_060319Link to BLAST:NP_060319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180233.1 238 O75204 238 100% 0 0
NP_060319.1 238 O75204 238 100% 0 0

Chromosomal Locations for CCDS 2018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96253808 96254115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96254833 96254997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96265138 96265381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGTACGCCCCCGGAGGCGCAGGGCTGCCCGGCGGGCGCCGGCGGAGGAGCCCGGGAGGCAGCGCTCTGC
CCAAGCAGCCGGAGCGTAGCCTGGCCTCGGCCCTGCCTGGCGCCCTGTCTATCACGGCGCTGTGCACTGC
CCTCGCCGAGCCCGCCTGGTTGCACATCCACGGAGGCACCTGTTCGCGCCAGGAGCTGGGGGTCTCCGAC
GTGTTGGGCTATGTGCACCCGGACCTGCTGAAAGATTTCTGCATGAATCCCCAGACAGTGCTGCTCCTGC
GGGTCATCGCCGCCTTCTGTTTCCTGGGCATCCTGTGTAGTCTCTCCGCTTTCCTTCTGGATGTCTTTGG
GCCGAAGCATCCTGCTCTGAAGATCACTCGTCGCTATGCCTTCGCCCATATCCTAACGGTTCTGCAGTGT
GCCACCGTCATTGGCTTTTCTTATTGGGCTTCTGAACTCATCTTGGCCCAGCAGCAGCAGCATAAGAAGT
ACCATGGATCCCAGGTCTATGTCACCTTCGCCGTTAGCTTCTACCTGGTGGCAGGAGCTGGTGGAGCCTC
AATCCTGGCCACGGCAGCCAACCTCCTGCGCCACTACCCCACAGAGGAAGAGGAGCAGGCGCTGGAGCTG
CTCTCAGAGATGGAAGAGAACGAGCCCTACCCGGCGGAATATGAGGTCATCAACCAGTTCCAGCCACCCC
CTGCTTACACACCCTAA

Translation (238 aa):
MYAPGGAGLPGGRRRRSPGGSALPKQPERSLASALPGALSITALCTALAEPAWLHIHGGTCSRQELGVSD
VLGYVHPDLLKDFCMNPQTVLLLRVIAAFCFLGILCSLSAFLLDVFGPKHPALKITRRYAFAHILTVLQC
ATVIGFSYWASELILAQQQQHKKYHGSQVYVTFAVSFYLVAGAGGASILATAANLLRHYPTEEEEQALEL
LSEMEENEPYPAEYEVINQFQPPPAYTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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