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Report for CCDS3078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3078.1 Public Homo sapiens 3 NPHP3 24 110 108 CCDS HistoryNCBI Gene:27031Re-query CCDS DB by CCDS ID:3078.1Re-query CCDS DB by GeneID:27031See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337331.10 ENSP00000338766.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337331.10Link to Ensembl Protein Viewer:ENSP00000338766.5Re-query CCDS DB by Nucleotide ID:ENST00000337331Re-query CCDS DB by Protein ID:ENSP00000338766
Original member Current member NCBI NM_153240.5 NP_694972.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153240.5Link to Protein Sequence:NP_694972.3Re-query CCDS DB by Nucleotide ID:NM_153240Re-query CCDS DB by Protein ID:NP_694972Link to BLAST:NP_694972.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694972.3 1330 Q7Z494-1 1330 100% 0 0

Chromosomal Locations for CCDS 3078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132681910 132682090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132682703 132682818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132683399 132683524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132684554 132684794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132686260 132686387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132687151 132687226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132688650 132688891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132689074 132689263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132690528 132690650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132691192 132691286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132692654 132692818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132694827 132694965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132696731 132696813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132697260 132697362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132699353 132699450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132699918 132700061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132700334 132700448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132701430 132701533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132704198 132704371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132705740 132705814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132708101 132708257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132713126 132713286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132715085 132715218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132716757 132716909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132718994 132719144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132719705 132719830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132721963 132722355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3993 nt):
ATGGGGACCGCCTCGTCGCTCGTGAGCCCCGCGGGCGGGGAAGTGATCGAGGACACGTACGGGGCGGGCG
GCGGCGAGGCCTGCGAGATCCCGGTGGAGGTGAAGCCCAAGGCCCGCCTGCTGCGCAACTCGTTCCGCCG
AGGCGCGGGGGCGGCAGCAGGGGCCGGGCCCGGGTCGCTGCCCCGCGGGGTGGGCGCGGGCGGGCTGCTG
GGGGCCAGCTTCAAGTCCACTGGCTCGTCGGTGCCAGAGCTGGAGTACGCGGCGGCCGAGTACGAGCGGC
TCAGGAAGGAGTACGAGATCTTTCGCGTCAGCAAGAACCAGGAGTTGTTGTCCATGGGCCGCCGCGAGGC
CAAGCTGGACACGGAGAACAAGCGGCTGCGGGCCGAACTGCAGGCACTTCAAAAAACGTATCAGAAGATA
CTTCGAGAAAAAGAAAGTGCTTTAGAAGCGAAATACCAAGCAATGGAGAGAGCAGCAACATTTGAACATG
ACAGAGATAAAGTTAAAAGGCAATTCAAGATTTTTAGGGAGACCAAAGAAAATGAAATTCAGGACTTACT
GAGGGCCAAGAGGGAGTTGGAGAGCAAACTTCAGAGGCTACAGGCTCAGGGTATCCAAGTATTTGATCCT
GGGGAGTCTGATTCAGATGACAACTGTACAGATGTCACTGCTGCTGGAACCCAATGTGAATATTGGACTG
GCGGAGCCTTGGGAAGTGAACCTTCCATAGGAAGCATGATCCAGCTTCAGCAGTCCTTCAGAGGCCCTGA
GTTTGCCCATAGTTCTATAGATGTGGAAGGACCCTTTGCAAATGTTAATAGAGATGACTGGGATATTGCT
GTAGCTAGTTTATTACAAGTTACTCCTCTGTTTTCACATTCTCTGTGGAGTAACACTGTCAGATGTTACC
TCATTTATACAGATGAAACCCAGCCTGAGATGGATCTTTTCCTTAAGGACTATTCACCTAAACTTAAGAG
AATGTGCGAGACAATGGGATATTTTTTCCATGCTGTTTATTTTCCAATAGATGTTGAAAATCAATACCTC
ACTGTAAGAAAATGGGAAATTGAGAAAAGTTCTTTAGTTATTTTATTTATTCACTTAACATTACCAAGCC
TTTTATTGGAAGACTGTGAAGAAGCTTTTCTGAAAAACCCTGAAGGAAAACCTCGATTAATCTTTCATCG
TTTGGAAGATGGAAAAGTCAGTTCTGACTCTGTCCAGCAATTGATTGATCAAGTTTCTAATCTAAACAAG
ACCAGCAAAGCCAAGATCATTGATCACTCAGGAGATCCTGCAGAAGGAGTATATAAAACTTATATTTGTG
TAGAAAAGATTATTAAACAGGACATACTGGGTTTTGAGAACACAGACTTGGAGACTAAGGATTTGGGCAG
TGAGGATTCCATTCCAGAAGAAGATGATTTTGGTGATGTTCTGTGGGACATACATGATGAACAAGAGCAA
ATGGAAACTTTTCAGCAGGCTTCTAATTCAGCCCATGAGTTGGGATTTGAGAAATATTACCAACGCCTTA
ATGATCTAGTGGCAGCACCAGCCCCGATTCCACCTCTTCTCGTGTCTGGAGGACCAGGTTCTGGGAAGTC
TCTTCTTTTATCAAAGTGGATTCAATTACAACAGAAGAATTCCCCCAACACACTGATTCTTTCCCATTTT
GTGGGAAGGCCCATGTCAACCAGCTCAGAGTCCTCCTTGATTATTAAACGACTAACTCTAAAGTTGATGC
AGCACTCTTGGTCAGTCTCTGCTCTGACACTGGATCCTGCTAAGCTTCTGGAAGAATTTCCACGTTGGCT
GGAAAAACTCTCTGCTCGTCATCAAGGCAGCATCATCATCGTTATTGATTCTATAGATCAAGTTCAGCAA
GTTGAAAAACACATGAAATGGCTGATAGATCCACTGCCAGTGAATGTAAGAGTAATTGTTTCTGTGAATG
TAGAAACATGCCCTCCAGCATGGAGGTTGTGGCCTACACTTCATCTTGATCCCTTAAGTCCAAAAGATGC
AAAATCTATTATAATTGCAGAATGCCACTCTGTAGACATTAAATTGAGTAAAGAGCAGGAGAAGAAGCTA
GAACGACACTGTCGTTCTGCTACAACCTGCAATGCCCTTTATGTCACCCTTTTCGGCAAAATGATCGCGC
GTGCTGGGAGAGCAGGCAATTTAGATAAAATCCTTCATCAGTGTTTCCAGTGTCAAGATACTCTTTCATT
ATATAGACTTGTTCTGCACTCTATCCGGGAGTCCATGGCAAATGATGTGGATAAAGAGCTAATGAAGCAG
ATCCTCTGCCTTGTCAATGTTAGTCACAATGGTGTGAGTGAATCAGAACTGATGGAACTCTATCCTGAGA
TGTCCTGGACTTTCTTGACCTCCCTTATTCACAGTTTATACAAAATGTGTTTGTTGACTTATGGATGTGG
CTTGCTTAGGTTTCAACATCTGCAGGCTTGGGAAACAGTGAGATTGGAGTACCTGGAAGGCCCCACTGTT
ACTTCTTCATACAGGCAAAAGCTAATCAACTATTTCACCTTGCAGCTAAGTCAGGACAGAGTGACTTGGA
GAAGTGCAGATGAACTCCCGTGGCTTTTTCAGCAGCAGGGAAGTAAACAGAAGCTGCATGATTGCCTTCT
TAATCTCTTTGTGTCTCAAAACCTTTATAAAAGGGGACACTTTGCTGAGTTGCTGAGTTATTGGCAGTTT
GTTGGCAAAGACAAAAGTGCAATGGCAACAGAATACTTCGATTCATTGAAGCAGTATGAGAAAAACTGCG
AAGGCGAGGACAACATGAGTTGCTTAGCTGATCTTTATGAAACCTTGGGGCGATTTCTCAAGGATCTAGG
CCTTCTCAGTCAGGCCATAGTACCTTTGCAGAGGTCTTTAGAGATTCGAGAAACAGCTTTAGATCCCGAT
CACCCAAGAGTAGCCCAGTCCCTCCACCAACTAGCAAGTGTATACGTGCAGTGGAAGAAGTTTGGCAATG
CAGAACAACTGTATAAACAGGCGTTGGAAATCTCAGAAAATGCTTATGGTGCGGACCATCCATATACTGC
TCGTGAACTTGAAGCACTTGCAACTTTGTACCAGAAACAAAATAAATATGAACAAGCTGAACATTTTAGG
AAAAAATCCTTTAAAATTCATCAGAAAGCTATAAAGAAAAAAGGCAACTTGTACGGATTTGCCCTTTTAC
GTAGACGGGCTTTACAGTTAGAAGAGCTTACATTAGGTAAGGACACACCTGATAATGCTCGGACCCTCAA
TGAACTGGGTGTTCTCTACTATCTTCAAAATAACCTGGAAACAGCTGACCAGTTTCTGAAGCGTTCCTTA
GAAATGAGGGAGCGAGTTCTAGGACCAGATCACCCTGACTGTGCTCAGTCTTTGAATAATCTGGCAGCTC
TATGCAATGAAAAGAAACAGTATGATAAAGCAGAAGAACTTTATGAAAGAGCTTTAGATATTCGGAGACG
TGCATTAGCTCCTGATCACCCTTCTTTGGCATATACGGTGAAGCATCTTGCCATCTTGTATAAGAAAATG
GGGAAACTTGACAAAGCTGTACCTTTGTATGAATTGGCTGTTGAAATTCGACAGAAATCTTTTGGCCCAA
AGCACCCTAGTGTAGCTACTGCCTTGGTGAACTTAGCTGTTCTTTATAGCCAAATGAAAAAACACGTTGA
AGCTTTGCCATTATATGAAAGAGCATTAAAGATTTATGAAGATAGCCTGGGTCGGATGCATCCTCGAGTT
GGAGAAACACTGAAAAATTTAGCTGTGCTTAGCTATGAAGGAGGAGATTTTGAAAAAGCTGCTGAATTAT
ACAAAAGGGCAATGGAAATAAAAGAAGCAGAAACATCACTCTTGGGTGGAAAAGCTCCTTCACGCCATTC
ATCAAGTGGAGACACGTTTAGCTTAAAAACAGCTCATTCTCCTAATGTTTTCCTTCAGCAAGGACAAAGG
TAA

Translation (1330 aa):
MGTASSLVSPAGGEVIEDTYGAGGGEACEIPVEVKPKARLLRNSFRRGAGAAAGAGPGSLPRGVGAGGLL
GASFKSTGSSVPELEYAAAEYERLRKEYEIFRVSKNQELLSMGRREAKLDTENKRLRAELQALQKTYQKI
LREKESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQGIQVFDP
GESDSDDNCTDVTAAGTQCEYWTGGALGSEPSIGSMIQLQQSFRGPEFAHSSIDVEGPFANVNRDDWDIA
VASLLQVTPLFSHSLWSNTVRCYLIYTDETQPEMDLFLKDYSPKLKRMCETMGYFFHAVYFPIDVENQYL
TVRKWEIEKSSLVILFIHLTLPSLLLEDCEEAFLKNPEGKPRLIFHRLEDGKVSSDSVQQLIDQVSNLNK
TSKAKIIDHSGDPAEGVYKTYICVEKIIKQDILGFENTDLETKDLGSEDSIPEEDDFGDVLWDIHDEQEQ
METFQQASNSAHELGFEKYYQRLNDLVAAPAPIPPLLVSGGPGSGKSLLLSKWIQLQQKNSPNTLILSHF
VGRPMSTSSESSLIIKRLTLKLMQHSWSVSALTLDPAKLLEEFPRWLEKLSARHQGSIIIVIDSIDQVQQ
VEKHMKWLIDPLPVNVRVIVSVNVETCPPAWRLWPTLHLDPLSPKDAKSIIIAECHSVDIKLSKEQEKKL
ERHCRSATTCNALYVTLFGKMIARAGRAGNLDKILHQCFQCQDTLSLYRLVLHSIRESMANDVDKELMKQ
ILCLVNVSHNGVSESELMELYPEMSWTFLTSLIHSLYKMCLLTYGCGLLRFQHLQAWETVRLEYLEGPTV
TSSYRQKLINYFTLQLSQDRVTWRSADELPWLFQQQGSKQKLHDCLLNLFVSQNLYKRGHFAELLSYWQF
VGKDKSAMATEYFDSLKQYEKNCEGEDNMSCLADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPD
HPRVAQSLHQLASVYVQWKKFGNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFR
KKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNELGVLYYLQNNLETADQFLKRSL
EMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKM
GKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRV
GETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAETSLLGGKAPSRHSSSGDTFSLKTAHSPNVFLQQGQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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