NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33537.1 Public Homo sapiens 21 SCAF4 24 110 108 CCDS HistoryNCBI Gene:57466Re-query CCDS DB by CCDS ID:33537.1Re-query CCDS DB by GeneID:57466See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286835.12 ENSP00000286835.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286835.12Link to Ensembl Protein Viewer:ENSP00000286835.7Re-query CCDS DB by Nucleotide ID:ENST00000286835Re-query CCDS DB by Protein ID:ENSP00000286835
Original member Current member NCBI NM_020706.2 NP_065757.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020706.2Link to Protein Sequence:NP_065757.1Re-query CCDS DB by Nucleotide ID:NM_020706Re-query CCDS DB by Protein ID:NP_065757Link to BLAST:NP_065757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065757.1 1147 O95104-1 1147 100% 0 0

Chromosomal Locations for CCDS 33537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 31671399 31672354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685049 31685240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685398 31685484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31685568 31685733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31688307 31688464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31690797 31690953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31691817 31691930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31692349 31692449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31693294 31693484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31694204 31694289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31694813 31694980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31696113 31696221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31696569 31696750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31700995 31701171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31701776 31701918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31702244 31702379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31703765 31703926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31705423 31705467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31706274 31706357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 31731663 31731692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3444 nt):
ATGGACGCCGTCAACGCCTTCAACCAGGAGCTCTTTTCGCTTATGGATATGAAACCTCCCATCTCTAGAG
CCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAGCTTTATAAGCATGTAGTTCAAATAGT
AGAAAAGTTCATCAAAAAGTGTAAACCAGAATACAAGGTTCCGGGATTATATGTAATTGACTCAATTGTG
CGACAGTCTCGTCATCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAACATAACTG
CCACATTCCAATATTTATATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTGAACCTTTG
GCAAAAAAATGGAGTGTTCAAAATTGAAATTATTCAACCTCTTTTGGACATGGCAGCGGGAACCAGTAAT
GCAGCCCCAGTAGCAGAAAATGTTACCAATAATGAAGGCTCACCTCCACCTCCAGTAAAAGTTTCTTCTG
AACCTCCCACACAAGCCACTCCAAACTCCGTCCCAGCTGTACCACAGTTGCCCAGCTCTGATGCTTTTGC
TGCTGTGGCTCAGCTGTTTCAGACAACTCAAGGCCAACAGCTTCAGCAGATCCTTCAGACTTTTCAACAG
CCTCCAAAACCACAGTCTCCTGCCCTTGACAATGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGT
TAAAGACAACTCCTACACAACCATCTGAACAAAAAGCTGCTTTCCCCCCACCTGAACAGAAAACTGCATT
TGACAAGAAGTTGCTTGATAGATTTGACTATGATGATGAGCCAGAAGCTGTGGAAGAATCAAAGAAAGAG
GATACCACTGCCGTCACCACGACAGCACCTGCTGCCGCAGTACCCCCTGCACCCACCGCCACCGTGCCTG
CTGCTGCTGCACCCGCTGCTGCCTCTCCTCCTCCTCCACAGGCACCATTTGGCTTTCCTGGAGATGGCAT
GCAGCAGCCAGCATACACACAGCATCAAAATATGGATCAGTTTCAGCCACGAATGATGGGAATACAACAG
GATCCAATGCACCATCAGGTTCCACTTCCTCCTAATGGACAAATGCCAGGATTTGGACTTCTTCCTACAC
CTCCATTTCCTCCCATGGCTCAGCCTGTGATTCCTCCAACTCCACCAGTGCAGCAGCCTTTCCAAGCTTC
TTTTCAGGCACAAAATGAACCACTTACACAGAAGCCGCATCAGCAGGAAATGGAAGTAGAACAACCTTGT
ATTCAAGAGGTTAAGCGACATATGTCTGATAACAGAAAGTCAAGATCTAGGTCAGCATCCAGGTCACCAA
AAAGGAGGCGATCTAGATCTGGTTCTAGATCTCGAAGGTCTCGGCATCGACGTTCTCGATCTCGGTCCAG
GGATAGACGCCGACATTCTCCCCGATCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGAGAACGT
CGACAAAAAGGCCTCCCTCAAGTGAAACCGGAAACTGCAAGTGTTTGCAGTACTACCCTCTGGGTGGGGC
AGCTGGACAAAAGAACTACTCAGCAGGATGTTGCCAGTCTCTTGGAAGAGTTTGGTCCAATTGAATCAAT
TAATATGATTCCTCCCAGGGGTTGTGCCTATATTGTTATGGTTCATAGGCAAGATGCCTATCGTGCCCTG
CAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAGATTGCCTGGGCCTTAAACAAAG
GAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACTTGGTGTTACTTATATTCCATGGGACAAAGT
CAAGCCTGAGGAACTGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGACACACTTAACCCAGATTGG
AAAGGAATTCCTAAGAAGCCTGAAAATGAAGTTGCTCAAAATGGAGGTGCTGAAACCTCACACACAGAAC
CAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGT
GCCACCTCCACAGGTCCCACCACATCAACCGGGTCCACCTGTAGTTGGTGCTCTCCAGCCGCCTGCTTTC
ACGCCTCCTCTGGGAATACCGCCTCCAGGCTTTGGTCCTGGTGTTCCTCCTCCCCCTCCTCCTCCACCAT
TTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAGGTTTTCTGCCTCCTGGACCCCCACCTCCTAT
AACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAGCATCCCAAACTCTACTATCGCTGGT
ATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAG
GAAACGCCGAGTCTGGTGACAGCGTGAAAATGTATGGCTCTGCCGTGCCACCTGCTGCACCCACGAATCT
GCCCACCCCTCCTGTAACCCAGCCTGTTTCACTTCTTGGCACTCAAGGAGTTGCCCCTGGTCCTGTAATT
GGACTTCAGGCACCATCTACTGGTCTTCTTGGCGCCCGGCCCGGTCTCATCCCACTCCAGCGCCCTCCAG
GAATGCCCCCACCTCACTTACAGCGGTTCCCTTTGATGCCGCCCCGTCCCATGCCACCGCACATGATGCA
CAGAGGCCCACCGCCAGGACCAGGGGGCTTTGCGATGCCTCCACCTCATGGAATGAAAGGTCCCTTCCCA
CCGCATGGCCCCTTTGTTAGGCCTGGTGGAATGCCAGGGCTCGGGGGCCCAGGGCCAGGCCCAGGGGGTC
CTGAAGACAGAGACGGAAGGCAACAGCCGCCGCAGCAGCCACAGCAGCAGCCACAGCCGCAGGCGCCCCA
GCAACCACAGCAGCAGCAGCAGCAGCAGCCACCACCATCACAACAGCCTCCACCAACACAGCAGCAGCCA
CAGCAGTTTAGAAATGATAACAGGCAGCAGTTCAATTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGAT
CTTTTGGAAATAGGGTGGAAAATGACCGGGAACGGTATGGGAACCGTAATGATGATAGAGATAATAGTAA
CCGTGACAGGAGAGAGTGGGGAAGGAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAGAAAT
AGACGCTCTAGTGGGCATCGAGACAGAGAGAGAGATTCTAGAGATAGAGAGTCTCGTAGAGAGAAGGAAG
AAGCCCGAGGAAAGGAAAAGCCTGAGGTGACAGACAGGGCAGGTGGTAACAAAACCGTTGAACCTCCCAT
TAGCCAAGTGGGAAATGTAGACACTGCTTCAGAACTTGAGAAGGGGGTGTCTGAGGCTGCAGTCCTAAAG
CCTTCTGAAGAGTTACCTGCTGAGGCTACCTCATCCGTTGAACCCGAAAAGGATTCTGGCTCAGCAGCAG
AGGCTCCTCGTTAG

Translation (1147 aa):
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV
RQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSN
AAPVAENVTNNEGSPPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQ
PPKPQSPALDNAVMAQVQAITAQLKTTPTQPSEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKE
DTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQ
DPMHHQVPLPPNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQPFQASFQAQNEPLTQKPHQQEMEVEQPC
IQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERER
RQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRAL
QKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDW
KGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAF
TPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAG
INEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVI
GLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFP
PHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQQP
QQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRREWGRRSPDRDRHRDLEERN
RRSSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGGNKTVEPPISQVGNVDTASELEKGVSEAAVLK
PSEELPAEATSSVEPEKDSGSAAEAPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH