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Report for CCDS34437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34437.1 Public Homo sapiens 6 BRPF3 24 110 108 CCDS HistoryNCBI Gene:27154Re-query CCDS DB by CCDS ID:34437.1Re-query CCDS DB by GeneID:27154See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34437.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357641.10 ENSP00000350267.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357641.10Link to Ensembl Protein Viewer:ENSP00000350267.6Re-query CCDS DB by Nucleotide ID:ENST00000357641Re-query CCDS DB by Protein ID:ENSP00000350267
Original member Current member NCBI NM_015695.3 NP_056510.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015695.3Link to Protein Sequence:NP_056510.2Re-query CCDS DB by Nucleotide ID:NM_015695Re-query CCDS DB by Protein ID:NP_056510Link to BLAST:NP_056510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056510.2 1205 Q9ULD4-1 1205 100% 0 0

Chromosomal Locations for CCDS 34437.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36200323 36201770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36204658 36204814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36207313 36207444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36209787 36209915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36210216 36210528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36211258 36211560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36213880 36214386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36217917 36218010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36222168 36222265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36225267 36225364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36228902 36229056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36230426 36230609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3618 nt):
ATGAGGAAGCCTCGTCGGAAGTCCCGGCAGAATGCCGAGGGCCGGCGTTCCCCGTCCCCCTACAGTCTCA
AG
TGCTCACCCACCCGGGAGACCCTGACATATGCCCAGGCCCAGCGGATTGTCGAGGTAGACATTGATGG
A
CGCCTGCATCGTATCAGCATCTATGACCCACTCAAAATCATTACTGAAGATGAGCTAACTGCCCAGGAT
ATC
ACCGAATGCAATAGTAACAAGGAAAACAGTGAACAGCCTCAGTTCCCTGGCAAGTCCAAGAAACCCT
CA
TCCAAGGGCAAAAAGAAGGAATCCTGCTCCAAGCATGCATCTGGTACTTCCTTCCACCTCCCACAGCC
C
AGCTTCCGTATGGTGGACTCAGGCATCCAGCCAGAAGCACCCCCGCTGCCTGCTGCCTACTACCGCTAC
ATT
GAGAAGCCACCTGAAGACCTGGATGCAGAGGTAGAGTATGACATGGATGAGGAGGACCTTGCCTGGC
TG
GACATGGTGAATGAAAAACGGCGAGTAGATGGGCACAGTTTGGTGTCTGCAGATACCTTTGAGCTGCT
G
GTAGACCGGCTTGAGAAAGAGTCATACTTGGAGAGTCGCAGCAGTGGGGCCCAACAGTCACTCATCGAT
GAA
GACGCTTTCTGCTGTGTGTGCCTGGATGATGAATGTCACAATAGCAATGTTATTCTCTTCTGTGACA
TC
TGCAACCTGGCTGTACACCAGGAGTGCTATGGCGTCCCATACATCCCTGAGGGCCAGTGGCTATGCCG
C
TGCTGCCTGCAGTCTCCCTCCCGGCCTGTGGATTGCATCCTTTGCCCCAATAAGGGTGGCGCCTTCAAA
CAG
ACCAGTGATGGGCACTGGGCCCATGTGGTGTGTGCCATCTGGATCCCTGAAGTCTGCTTTGCTAACA
CC
GTGTTCTTGGAACCTATTGAGGGCATTGACAATATCCCGCCTGCCCGCTGGAAACTAACCTGCTATAT
C
TGCAAGCAGAAAGGGCTAGGTGCAGCCATCCAGTGCCATAAGGTGAACTGCTACACAGCATTCCATGTG
ACA
TGTGCACAGCGGGCTGGGCTCTTCATGAAGATTGAGCCCATGCGCGAAACCAGCCTCAATGGCACCA
TC
TTTACAGTGCGCAAGACTGCCTACTGTGAGGCCCACTCGCCACCAGGTGCGGCCACTGCTAGGAGGAA
G
GGCGACTCCCCTAGAAGCATCAGTGAGACTGGCGATGAGGAAGGGCTGAAGGAGGGTGATGGAGAGGAG
GAA
GAAGAGGAAGAGGTGGAGGAAGAAGAGCAGGAAGCTCAAGGCGGGGTGAGTGGCTCCCTCAAGGGAG
TG
CCCAAGAAAAGCAAGATGAGTTTGAAGCAGAAGATCAAGAAGGAGCCAGAGGAAGCAGGCCAAGACAC
A
CCCTCCACTCTCCCCATGCTTGCTGTCCCACAGATACCCTCTTACAGGTTGAACAAGATCTGTAGTGGT
CTC
TCCTTTCAGAGGAAAAACCAGTTTATGCAGCGGCTTCACAATTATTGGCTGTTGAAGCGGCAGGCAC
GG
AATGGTGTCCCTCTTATCCGGCGCTTGCACTCCCATCTGCAGTCCCAAAGAAACGCTGAGCAGCGAGA
G
CAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGTATTGGCAGAAGCTCCGGCATGACTTGGAG
CGG
GCGCGGCTGCTGATTGAGCTGATTCGGAAGAGAGAGAAGCTCAAACGAGAGCAGGTCAAAGTCCAGC
AG
GCTGCCATGGAGCTGGAGCTGATGCCATTCAATGTTCTGTTGAGGACAACACTGGACCTGCTGCAGGA
G
AAGGATCCTGCACACATCTTCGCAGAACCAGTCAACTTGAGTGAGGTTCCAGATTACCTGGAATTCATA
TCC
AAGCCAATGGATTTTTCTACTATGAGGCGGAAGCTGGAGTCCCACCTGTACCGCACCTTGGAGGAGT
TT
GAGGAGGACTTTAACCTTATAGTTACCAACTGCATGAAGTATAATGCTAAAGACACAATTTTCCACCG
A
GCAGCTGTCCGCCTGCGGGACCTGGGAGGGGCCATCCTACGGCACGCCCGGCGGCAGGCAGAGAACATC
GGC
TATGACCCCGAGAGGGGCACTCACCTGCCCGAGTCACCCAAATTGGAAGACTTTTACCGCTTCTCCT
GG
GAAGACGTGGACAACATCCTCATCCCAGAGAACCGGGCCCATTTGTCCCCAGAGGTGCAGCTGAAGGA
G
CTGCTGGAGAAACTGGACCTGGTGAGCGCCATGCGGTCCAGTGGGGCCCGCACCCGTCGTGTCCGCCTG
CTA
CGCCGGGAGATCAATGCCCTTCGGCAGAAGCTGGCACAGCCACCACCACCACAGCCACCATCACTCA
AC
AAGACAGTATCCAATGGGGAGCTGCCAGCAGGGCCCCAGGGGGATGCAGCTGTGCTGGAGCAGGCCTT
G
CAGGAGGAGCCAGAAGACGATGGGGACAGAGATGACTCCAAACTGCCTCCTCCGCCAACCCTGGAGCCC
ACT
GGGCCTGCACCTTCCTTGTCTGAGCAAGAATCCCCCCCGGAGCCCCCTACTCTGAAACCCATTAATG
AT
AGCAAACCTCCAAGCAGGTTCCTAAAGCCCAGAAAGGTGGAAGAAGATGAGCTCTTGGAAAAATCACC
A
CTGCAGCTAGGGAATGAGCCTTTGCAACGCTTGCTCAGTGACAATGGCATCAACAGACTATCCCTCATG
GCC
CCTGACACCCCGGCCGGTACCCCACTTAGTGGTGTGGGTCGCCGCACATCAGTCCTCTTCAAGAAGG
CC
AAGAATGGGGTTAAGCTACAGAGAAGCCCAGACAGGGTCCTGGAGAATGGCGAGGACCATGGTGTGGC
A
GGCTCTCCTGCCTCTCCAGCCAGCATCGAGGAAGAGCGCCACTCCCGGAAGCGGCCAAGGAGCAGGAGC
TGT
AGTGAGAGCGAAGGGGAGAGGTCCCCCCAGCAGGAGGAAGAGACAGGCATGACCAACGGCTTTGGAA
AA
CACACCGAAAGCGGGTCTGACTCTGAATGTAGTTTGGGTCTCAGTGGTGGACTGGCATTTGAAGCTTG
C
AGTGGTCTGACGCCCCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGAGTGCCCTTCCTGGAAGGT
GTG
AACGGAGACTCTGACTACAATGGCTCAGGCAGAAGCCTCCTGCTGCCCTTTGAAGACCGCGGAGACC
TG
GAGCCCTTGGAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCTGCCTTGATCATCGATCC
C
AAGATGCCCCGGGAGGGCCTCCTGCACAATGGCGTTCCCATCCCTGTCCCCCCGCTGGACGTGCTGAAG
CTG
GGAGAGCAGAAACAGGCAGAGGCTGGAGAGAAGCTCTTCCTTGTCCTCTTCTTTGACAACAAGCGCA
CC
TGGCAGTGGCTTCCAAGGGACAAAGTCCTGCCCTTGGGTGTGGAAGACACCGTGGACAAGCTCAAGAT
G
CTGGAAGGCCGCAAGACCAGCATCCGCAAGTCAGTGCAGGTGGCCTATGACCGTGCGATGATCCACCTG
AGC
AGAGTCCGGGGGCCCCACTCCTTCGTCACTTCCAGCTACCTGTAA


Translation (1205 aa):
MRKPRRKSRQNAEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDIDGRLHRISIYDPLKIITEDELTAQD
I
TECNSNKENSEQPQFPGKSKKPSSKGKKKESCSKHASGTSFHLPQPSFRMVDSGIQPEAPPLPAAYYRY
I
EKPPEDLDAEVEYDMDEEDLAWLDMVNEKRRVDGHSLVSADTFELLVDRLEKESYLESRSSGAQQSLID
E
DAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFK
Q
TSDGHWAHVVCAIWIPEVCFANTVFLEPIEGIDNIPPARWKLTCYICKQKGLGAAIQCHKVNCYTAFHV
T
CAQRAGLFMKIEPMRETSLNGTIFTVRKTAYCEAHSPPGAATARRKGDSPRSISETGDEEGLKEGDGEE
E
EEEEVEEEEQEAQGGVSGSLKGVPKKSKMSLKQKIKKEPEEAGQDTPSTLPMLAVPQIPSY
RLNKICSG
L
SFQRKNQFMQRLHNYWLLKRQARNGVPLIRRLHSHLQSQRNAEQ
REQDEKTSAVKEELKYWQKLRHDLE
R
ARLLIELIRKREKLKREQ
VKVQQAAMELELMPFNVLLRTTLDLLQEKDPAHIFAEPVNLSEVPDYLEFI
S
KPMDFSTMRRKLESHLYRTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENI
G
YDPERGTHLPESPKLEDFYRFSWED
VDNILIPENRAHLSPEVQLKELLEKLDLVSAMRSSGARTRRVRL
L
RREINALRQKLAQPPPPQPPSLNKTVSNGELPAGPQGDAAVLEQALQEEPEDDGDR
DDSKLPPPPTLEP
T
GPAPSLSEQESPPEPPTLKPINDSKPPSRFLKPRKVEEDELLEKSPLQLGNEPLQRLLSDNGINRLSLM
A
PDTPAGTPLSGVGRRTSVLFKKAKNGVKLQRSPDRVLENGEDHGVAGSPASPASIEEERHSRKRPRSRS
C
SESEGERSPQQEEET
GMTNGFGKHTESGSDSECSLGLSGGLAFEACSGLTPPKRSRGKPALSRVPFLEG
V
NGDSDYNGS
GRSLLLPFEDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLK
L
GEQKQAEAGEKLFLVLFFDNKRT
WQWLPRDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHL
S
RVRGPHSFVTSSYL




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