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Report for CCDS34438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34438.1 Public Homo sapiens 6 PNPLA1 24 110 108 CCDS HistoryNCBI Gene:285848Re-query CCDS DB by CCDS ID:34438.1Re-query CCDS DB by GeneID:285848See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388715.7 ENSP00000373367.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388715.7Link to Ensembl Protein Viewer:ENSP00000373367.3Re-query CCDS DB by Nucleotide ID:ENST00000388715Re-query CCDS DB by Protein ID:ENSP00000373367
Original member Current member NCBI NM_173676.2 NP_775947.2 Accepted alive Link to Nucleotide Sequence:NM_173676.2Link to Protein Sequence:NP_775947.2Re-query CCDS DB by Nucleotide ID:NM_173676Re-query CCDS DB by Protein ID:NP_775947Link to BLAST:NP_775947.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775947.2 437 Q8N8W4-2 437 100% 0 0

Chromosomal Locations for CCDS 34438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36291400 36291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36293061 36293126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36294190 36294399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36295364 36295424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36301861 36302469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36306292 36306376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36307587 36307716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGTGCAGATGATGAGGCAGTTTCTGTACCGGGTCCTGCCCGAGGACTCCTACAAGGTCACCACGGGGA
AG
CTCCATGTGAGCCTCACCCGCTTAACGGACGGGGAGAATGTGGTGGTTTCAGAGTTCACGTCCAAGGA
G
GAGCTCATTGAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTGTGGCCTCATCCCCCCGACTTAC
CGC
GGTGTGAGGTACATCGATGGGGGCTTCACGGGCATGCAGCCCTGTGCCTTCTGGACCGACGCCATCA
CC
ATCTCCACCTTCAGTGGGCAGCAGGACATCTGTCCCCGGGACTGCCCGGCCATCTTCCACGACTTCCG
C
ATGTTCAACTGCTCCTTCCAGTTCTCCCTGGAGAACATCGCCAGGATGACCCACGCATTGTTCCCCCCG
GAC
CTGGTGATCCTGCACGATTACTACTACCGAGGGTACGAGGATGCAGTTTTGTACTTGAGGCGGCTGA
AT
GCTGTTTATCTTAATTCTTCCTCCAAGAGAGTGATTTTCCCCCGGGTGGAAGTGTACTGCCAGATAGA
A
CTCGCCCTTGGCAATGAGTGCCCTGAACGCAGTCAACCAAGCCTTCGAGCACGGCAGGCCAGTCTGGAA
GGA
GCCACACAACCTCACAAGGAGTGGGTTCCCAAAGGGGATGGAAGGGGCAGCCATGGTCCGCCTGTGT
CC
CAACCTGTGCAGACACTTGAATTCACATGCGAGTCACCTGTTTCAGCACCAGTCTCTCCACTTGAGCA
G
CCACCTGCACAGCCACTGGCCTCTTCAACTCCACTTTCTCTAAGTGGCATGCCACCTGTATCATTCCCA
GCT
GTGCACAAGCCACCCAGCTCCACACCTGGTTCATCACTGCCCACCCCACCACCTGGACTGTCACCTC
TG
TCACCTCAGCAGCAGGTACAACCGTCTGGATCACCAGCCAGATCCCTACACTCTCAGGCACCCACTTC
A
CCCAGGCCATCCCTGGGGCCTTCAACTGTGGGGGCACCTCAAACACTGCCCCGAAGTTCTCTTTCAGCC
TTC
CCTGCTCAGCCACCTGTGGAGGAACTAGGCCAAGAACAGCCCCAAGCTGTAGCTCTTCTTGTCTCTT
CA
AAACCAAAAAGCGCCGTGCCTCTGGTTCATGTGAAGGAAACCGTCAGCAAGCCTTATGTAACGGAGAG
C
CCTGCTGAAGACTCAAACTGGGTGAATAAGGTCTTCAAGAAGAACAAGCAAAAGACAAGTGGCACCAGA
AAA
GGCTTCCCAAGACATTCGGGATCCAAAAAACCAAGCAGCAAAGTGCAGTGA


Translation (437 aa):
MVQMMRQFLYRVLPEDSYKVTTGKLHVSLTRLTDGENVVVSEFTSKEELIEALYCSCFVPVYCGLIPPTY
R
GV
RYIDGGFTGMQPCAFWTDAITISTFSGQQDICPRDCPAIFHDFRMFNCSFQFSLENIARMTHALFPP
D
LV
ILHDYYYRGYEDAVLYLRRLNAVYLNSSSKRVIFPRVEVYCQIELALGNECPERSQPSLRARQASLE
G
ATQPHKEWVPKGDGRGSHGPPVSQPVQTLEFTCESPVSAPVSPLEQPPAQPLASSTPLSLSGMPPVSFP
A
VHKPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQTLPRSSLSA
F
PAQPPVEELGQEQPQ
AVALLVSSKPKSAVPLVHVKETVSKPYVTESPAEDSNWVNKVFKKNKQKTSGTR
K
GFPRHSGSKKPSSKVQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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