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Report for CCDS35071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35071.1 Public Homo sapiens 9 FANCC 24 110 108 CCDS HistoryNCBI Gene:2176Re-query CCDS DB by CCDS ID:35071.1Re-query CCDS DB by GeneID:2176See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289081.8 ENSP00000289081.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289081.8Link to Ensembl Protein Viewer:ENSP00000289081.3Re-query CCDS DB by Nucleotide ID:ENST00000289081Re-query CCDS DB by Protein ID:ENSP00000289081
Original member Current member EBI ENST00000375305.6 ENSP00000364454.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375305.6Link to Ensembl Protein Viewer:ENSP00000364454.1Re-query CCDS DB by Nucleotide ID:ENST00000375305Re-query CCDS DB by Protein ID:ENSP00000364454
Original member Current member NCBI NM_000136.3 NP_000127.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000136.3Link to Protein Sequence:NP_000127.2Re-query CCDS DB by Nucleotide ID:NM_000136Re-query CCDS DB by Protein ID:NP_000127Link to BLAST:NP_000127.2
Original member Current member NCBI NM_001243743.2 NP_001230672.1 Accepted alive Link to Nucleotide Sequence:NM_001243743.2Link to Protein Sequence:NP_001230672.1Re-query CCDS DB by Nucleotide ID:NM_001243743Re-query CCDS DB by Protein ID:NP_001230672Link to BLAST:NP_001230672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000127.2 558 Q00597 558 100% 0 0
NP_001230672.1 558 Q00597 558 100% 0 0

Chromosomal Locations for CCDS 35071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95101707 95101850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95107066 95107269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95111463 95111637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95114629 95114710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95117315 95117390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95125086 95125185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95126529 95126581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95135346 95135502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95149923 95150087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95171079 95171143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95172037 95172147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95240649 95240743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95247432 95247516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95249127 95249291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCTCAAGATTCAGTAGATCTTTCTTGTGATTATCAGTTTTGGATGCAGAAGCTTTCTGTATGGGATC
AGGCTTCCACTTTGGAAACCCAGCAAGACACCTGTCTTCACGTGGCTCAGTTCCAGGAGTTCCTAAGGAA
GATGTATGAAGCCTTGAAAGAGATGGATTCTAATACAGTCATTGAAAGATTCCCCACAATTGGTCAACTG
TTGGCAAAAGCTTGTTGGAATCCTTTTATTTTAGCATATGATGAAAGCCAAAAAATTCTAATATGGTGCT
TATGTTGTCTAATTAACAAAGAACCACAGAATTCTGGACAATCAAAACTTAACTCCTGGATACAGGGTGT
ATTATCTCATATACTTTCAGCACTCAGATTTGATAAAGAAGTTGCTCTTTTCACTCAAGGTCTTGGGTAT
GCACCTATAGATTACTATCCTGGTTTGCTTAAAAATATGGTTTTATCATTAGCGTCTGAACTCAGAGAGA
ATCATCTTAATGGATTTAACACTCAAAGGCGAATGGCTCCCGAGCGAGTGGCGTCCCTGTCACGAGTTTG
TGTCCCACTTATTACCCTGACAGATGTTGACCCCCTGGTGGAGGCTCTCCTCATCTGTCATGGACGTGAA
CCTCAGGAAATCCTCCAGCCAGAGTTCTTTGAGGCTGTAAACGAGGCCATTTTGCTGAAGAAGATTTCTC
TCCCCATGTCAGCTGTAGTCTGCCTCTGGCTTCGGCACCTTCCCAGCCTTGAAAAAGCAATGCTGCATCT
TTTTGAAAAGCTAATCTCCAGTGAGAGAAATTGTCTGAGAAGGATCGAATGCTTTATAAAAGATTCATCG
CTGCCTCAAGCAGCCTGCCACCCTGCCATATTCCGGGTTGTTGATGAGATGTTCAGGTGTGCACTCCTGG
AAACCGATGGGGCCCTGGAAATCATAGCCACTATTCAGGTGTTTACGCAGTGCTTTGTAGAAGCTCTGGA
GAAAGCAAGCAAGCAGCTGCGGTTTGCACTCAAGACCTACTTTCCTTACACTTCTCCATCTCTTGCCATG
GTGCTGCTGCAAGACCCTCAAGATATCCCTCGGGGACACTGGCTCCAGACACTGAAGCATATTTCTGAAC
TGCTCAGAGAAGCAGTTGAAGACCAGACTCATGGGTCCTGCGGAGGTCCCTTTGAGAGCTGGTTCCTGTT
CATTCACTTCGGAGGATGGGCTGAGATGGTGGCAGAGCAATTACTGATGTCGGCAGCCGAACCCCCCACG
GCCCTGCTGTGGCTCTTGGCCTTCTACTACGGCCCCCGTGATGGGAGGCAGCAGAGAGCACAGACTATGG
TCCAGGTGAAGGCCGTGCTGGGCCACCTCCTGGCAATGTCCAGAAGCAGCAGCCTCTCAGCCCAGGACCT
GCAGACGGTAGCAGGACAGGGCACAGACACAGACCTCAGAGCTCCTGCACAACAGCTGATCAGGCACCTT
CTCCTCAACTTCCTGCTCTGGGCTCCTGGAGGCCACACGATCGCCTGGGATGTCATCACCCTGATGGCTC
ACACTGCTGAGATAACTCACGAGATCATTGGCTTTCTTGACCAGACCTTGTACAGATGGAATCGTCTTGG
CATTGAAAGCCCTAGATCAGAAAAACTGGCCCGAGAGCTCCTTAAAGAGCTGCGAACTCAAGTCTAG

Translation (558 aa):
MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTVIERFPTIGQL
LAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSHILSALRFDKEVALFTQGLGY
APIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERVASLSRVCVPLITLTDVDPLVEALLICHGRE
PQEILQPEFFEAVNEAILLKKISLPMSAVVCLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSS
LPQAACHPAIFRVVDEMFRCALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAM
VLLQDPQDIPRGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT
ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLRAPAQQLIRHL
LLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIESPRSEKLARELLKELRTQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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