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Report for CCDS35400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35400.1 Public Homo sapiens X CT55 24 110 108 CCDS HistoryNCBI Gene:54967Re-query CCDS DB by CCDS ID:35400.1Re-query CCDS DB by GeneID:54967See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276241.11 ENSP00000276241.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276241.11Link to Ensembl Protein Viewer:ENSP00000276241.6Re-query CCDS DB by Nucleotide ID:ENST00000276241Re-query CCDS DB by Protein ID:ENSP00000276241
Original member Current member NCBI NM_001031705.3 NP_001026875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031705.3Link to Protein Sequence:NP_001026875.1Re-query CCDS DB by Nucleotide ID:NM_001031705Re-query CCDS DB by Protein ID:NP_001026875Link to BLAST:NP_001026875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026875.1 264 Q8WUE5-1 264 100% 0 0

Chromosomal Locations for CCDS 35400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135156959 135157028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135157316 135157503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135158199 135158311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135160411 135160555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135169594 135169778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135171078 135171171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCTCAGGCTTCTGAGACTTGCTTTGGCCTTCTACGGGAGGACGGCCGACCCTGCAGAGCGACAGGGCC
CACAGCAGCAGGGCCTCCCACAAGGTGACACCCAGTTGACAACTGTGCAGGGAGTTGTCACAAGTTTCTG
TGGTGATTATGGCATGATTGATGAGTCGATCTACTTCAGTAGTGATGTTGTGACTGGCAACGTGCCTCTA
AAAGTTGGACAAAAAGTTAATGTGGTTGTGGAAGAAGATAAACCACATTATGGATTGAGAGCAATCAAGG
TGGATGTTGTGCCTCGCCATCTTTATGGTGCTGGACCCTCAGACTCAGGAACCAGAGTTTTAATTGGATG
TGTTACTTCTATAAATGAAGATAATATTTATATTAGTAACAGCATTTATTTTTCCATAGCCATTGTTTCT
GAAGATTTTGTGCCTTATAAGGGTGACTTGTTAGAAGTTGAATATTCCACTGAGCCAGGCATCTCAAACA
TCAAGGCAACTTCTGTGAAGCCCATCCGTTGTATTCATACGGAAGAGGTCTGCATTACTAGCGTACATGG
AAGAAATGGGGTGATAGATTATACTATTTTTTTCACCTTGGATTCTGTGAAACTTCCTGATGGATACGTA
CCTCAAGTAGATGATATCGTCAATGTGGTCATGGTGGAGAGCATTCAGTTCTGCTTTATTTGGAGAGCGA
TTTCTATCACCCCAGTGCATAAATCCAGCAGCGGATTCCAGGATGACGGAGGCCTGGGACGGCCCAAAAG
GGAACGTCGGAGCCAAAGCATTTAA

Translation (264 aa):
MLRLLRLALAFYGRTADPAERQGPQQQGLPQGDTQLTTVQGVVTSFCGDYGMIDESIYFSSDVVTGNVPL
KVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLYGAGPSDSGTRVLIGCVTSINEDNIYISNSIYFSIAIVS
EDFVPYKGDLLEVEYSTEPGISNIKATSVKPIRCIHTEEVCITSVHGRNGVIDYTIFFTLDSVKLPDGYV
PQVDDIVNVVMVESIQFCFIWRAISITPVHKSSSGFQDDGGLGRPKRERRSQSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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