NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41720.1 Public Homo sapiens 11 RNF214 24 110 108 CCDS HistoryNCBI Gene:257160Re-query CCDS DB by CCDS ID:41720.1Re-query CCDS DB by GeneID:257160See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300650.9 ENSP00000300650.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300650.9Link to Ensembl Protein Viewer:ENSP00000300650.4Re-query CCDS DB by Nucleotide ID:ENST00000300650Re-query CCDS DB by Protein ID:ENSP00000300650
Original member Current member EBI ENST00000531452.5 ENSP00000431643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531452.5Link to Ensembl Protein Viewer:ENSP00000431643.1Re-query CCDS DB by Nucleotide ID:ENST00000531452Re-query CCDS DB by Protein ID:ENSP00000431643
Original member Current member NCBI NM_001077239.2 NP_001070707.1 Accepted alive Link to Nucleotide Sequence:NM_001077239.2Link to Protein Sequence:NP_001070707.1Re-query CCDS DB by Nucleotide ID:NM_001077239Re-query CCDS DB by Protein ID:NP_001070707Link to BLAST:NP_001070707.1
Original member Current member NCBI NM_207343.4 NP_997226.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207343.4Link to Protein Sequence:NP_997226.2Re-query CCDS DB by Nucleotide ID:NM_207343Re-query CCDS DB by Protein ID:NP_997226Link to BLAST:NP_997226.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070707.1 703 Q8ND24-1 703 100% 0 0
NP_997226.2 703 Q8ND24-1 703 100% 0 0

Chromosomal Locations for CCDS 41720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117234273 117234379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117238601 117239111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117239801 117239860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117244445 117244585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117246809 117246948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117279908 117280004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117280171 117280259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117281314 117281404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117281600 117281698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117281894 117282270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117282404 117282536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117282746 117282850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117283115 117283210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117285086 117285151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCAGCGTCTGAGGTTGCTGGTGTTGTGGCCAATGCCCCCAGTCCTCCGGAATCTTCTAGTTTATGTG
CTTCCAAATCAGACGAAGGTCTCCCAGATGGTCTAAGCACCAAAGACTCTGCACAGAAGCAGAAGAACTC
GCCTCTGTTGAGTGTAAGTAGCCAAACAATAACCAAGGAGAATAACAGAAATGTCCATTTGGAGCACTCA
GAGCAGAATCCTGGTTCATCAGCAGGTGACACCTCAGCAGCGCACCAGGTGGTTTTAGGAGAAAACTTGA
TAGCCACAGCCCTTTGTCTTTCTGGCAGTGGGTCTCAGTCTGATTTGAAGGATGTGGCCAGCACAGCAGG
AGAGGAGGGGGACACAAGCCTTCGGGAGAGCCTCCATCCAGTCACTCGGTCTCTTAAGGCAGGGTGCCAT
ACTAAGCAGCTTGCCTCCAGGAATTGCTCTGAAGAGAAATCCCCACAAACCTCCATCCTAAAGGAAGGTA
ACAGGGACACAAGCTTGGATTTCCGACCTGTAGTGTCTCCAGCAAATGGGGTTGAAGGAGTCCGAGTGGA
TCAGGATGATGATCAAGATAGCTCTTCCCTGAAGCTTTCTCAGAACATTGCTGTACAGACTGACTTTAAG
ACAGCTGATTCAGAGGTAAACACAGATCAAGATATTGAAAAGAATTTGGATAAAATGATGACAGAGAGAA
CCCTGTTGAAAGAGCGTTACCAGGAGGTCCTGGACAAACAGAGGCAAGTGGAGAATCAGCTCCAAGTGCA
ATTAAAGCAGCTTCAGCAAAGGAGAGAAGAGGAAATGAAGAATCACCAGGAGATATTAAAGGCTATTCAG
GATGTGACAATAAAGCGGGAAGAAACAAAGAAGAAGATAGAGAAAGAGAAGAAGGAGTTTTTGCAGAAGG
AGCAGGATCTGAAAGCTGAAATTGAGAAGCTTTGTGAGAAGGGCAGAAGAGAGGTGTGGGAAATGGAACT
GGATAGACTCAAGAATCAGGATGGCGAAATAAATAGGAACATTATGGAAGAGACTGAACGGGCCTGGAAG
GCAGAGATCTTATCACTAGAGAGCCGGAAAGAGTTACTGGTACTGAAACTAGAAGAAGCAGAAAAAGAGG
CAGAATTGCACCTTACTTACCTCAAGTCAACTCCCCCAACACTGGAGACAGTTCGTTCCAAACAGGAGTG
GGAGACGAGACTGAATGGAGTTCGGATAATGAAAAAGAATGTTCGTGACCAATTTAATAGTCATATCCAG
TTAGTGAGGAACGGAGCCAAGCTGAGCAGCCTTCCTCAAATCCCTACTCCCACTTTACCTCCACCCCCAT
CAGAGACAGACTTCATGCTTCAGGTGTTTCAACCCAGTCCCTCTCTGGCTCCTCGGATGCCCTTCTCCAT
TGGGCAGGTCACAATGCCCATGGTTATGCCCAGTGCAGATCCCCGCTCCTTGTCTTTCCCAATCCTGAAC
CCTGCCCTTTCCCAGCCCAGCCAGCCTTCCTCACCCCTTCCTGGCTCCCATGGCAGAAATAGCCCTGGCT
TGGGTTCCCTTGTCAGCCCCCACGGTCCACACATGCCCCCTGCCGCCTCCATCCCACCTCCCCCAGGCTT
GGGCGGTGTTAAGGCTTCTGCTGAAACTCCCCGGCCCCAACCAGTAGACAAACTGGAGAAGATCCTGGAG
AAGCTGCTGACCCGGTTCCCACAGTGCAATAAGGCCCAGATGACCAACATTCTTCAGCAGATCAAGACAG
CACGTACCACCATGGCAGGCCTGACCATGGAGGAACTTATCCAGTTGGTTGCTGCACGACTGGCAGAACA
TGAGCGGGTGGCAGCAAGTACTCAGCCACTTGGTCGCATCCGGGCCTTGTTCCCTGCTCCACTGGCCCAA
ATCAGTACCCCAATGTTCTTGCCTTCTGCCCAAGTTTCATATCCTGGAAGGTCTTCACATGCTCCAGCCA
CCTGTAAGCTATGTCTAATGTGCCAGAAACTCGTCCAGCCCAGTGAGCTGCATCCAATGGCGTGTACCCA
TGTATTGCACAAGGAGTGTATCAAATTCTGGGCCCAGACCAACACAAATGACACTTGTCCCTTTTGTCCA
ACTCTTAAATGA

Translation (703 aa):
MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKENNRNVHLEHS
EQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEGDTSLRESLHPVTRSLKAGCH
TKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFK
TADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQ
DVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWK
AEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ
LVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILN
PALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILE
KLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQ
ISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCP
TLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH