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Report for CCDS42849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42849.1 Public Homo sapiens 20 SIRPB2 24 110 108 CCDS HistoryNCBI Gene:284759Re-query CCDS DB by CCDS ID:42849.1Re-query CCDS DB by GeneID:284759See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359801.8 ENSP00000352849.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359801.8Link to Ensembl Protein Viewer:ENSP00000352849.3Re-query CCDS DB by Nucleotide ID:ENST00000359801Re-query CCDS DB by Protein ID:ENSP00000352849
Original member Current member NCBI NM_001122962.2 NP_001116434.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122962.2Link to Protein Sequence:NP_001116434.1Re-query CCDS DB by Nucleotide ID:NM_001122962Re-query CCDS DB by Protein ID:NP_001116434Link to BLAST:NP_001116434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116434.1 342 Q5JXA9-1 342 100% 0 0

Chromosomal Locations for CCDS 42849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1476167 1476336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1477338 1477403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1478266 1478607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1479700 1480065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1491275 1491359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGTGCTCCACGATGTCGGCCCCCACCTGCCTGGCCCACTTGCCTCCCTGCTTCCTGCTGCTGGCACTGG
TCCTTGTCCCCTCAGATGCCTCTGGGCAGAGCAGCAGGAATGACTGGCAGGTGCTACAGCCCGAGGGCCC
CATGCTGGTGGCAGAAGGTGAGACACTTCTACTGAGGTGTATGGTGGTCGGCTCCTGCACTGATGGTATG
ATAAAATGGGTGAAGGTGAGCACTCAGGACCAACAGGAAATTTATAACTTTAAACGTGGCTCCTTCCCTG
GGGTAATGCCCATGATCCAACGGACATCAGAACCACTGAATTGTGATTATTCCATCTATATCCACAATGT
CACCAGGGAGCACACTGGAACCTACCACTGTGTGAGGTTTGATGGTTTGAGTGAACACTCAGAAATGAAA
TCGGATGAAGGCACCTCAGTGCTTGTGAAGGGAGCTGGGGACCCTGAACCAGACCTGTGGATCATCCAGC
CCCAGGAATTGGTGTTGGGGACCACTGGAGACACTGTCTTTCTGAACTGCACAGTGCTTGGAGACGGTCC
CCCTGGACCCATCAGGTGGTTCCAGGGAGCTGGTCTGAGCCGGGAGGCCATTTACAACTTTGGAGGCATC
TCCCACCCCAAGGAGACAGCGGTGCAGGCCTCCAACAATGACTTCAGCATTCTTCTGCAAAACGTCTCCA
GTGAGGATGCAGGCACCTATTACTGTGTAAAGTTTCAGAGGAAACCCAACAGGCAATACCTGTCTGGACA
GGGCACCAGCCTGAAAGTGAAAGCAAAATCTACCTCTTCCAAAGAGGCAGAATTCACCAGTGAACCTGCA
ACTGAGATGTCTCCAACAGGCCTCCTGGTTGTGTTCGCACCTGTGGTCCTGGGGCTGAAGGCAATTACCT
TGGCTGCACTCCTACTGGCCCTGGCTACCTCTCGGAGGAGCCCTGGGCAAGAAGATGTCAAGACCACAGG
CCCAGCAGGAGCCATGAACACCTTAGCATGGAGCAAGGGTCAAGAGTGA

Translation (342 aa):
MCSTMSAPTCLAHLPPCFLLLALVLVPSDASGQSSRNDWQVLQPEGPMLVAEGETLLLRCMVVGSCTDGM
IKWVKVSTQDQQEIYNFKRGSFPGVMPMIQRTSEPLNCDYSIYIHNVTREHTGTYHCVRFDGLSEHSEMK
SDEGTSVLVKGAGDPEPDLWIIQPQELVLGTTGDTVFLNCTVLGDGPPGPIRWFQGAGLSREAIYNFGGI
SHPKETAVQASNNDFSILLQNVSSEDAGTYYCVKFQRKPNRQYLSGQGTSLKVKAKSTSSKEAEFTSEPA
TEMSPTGLLVVFAPVVLGLKAITLAALLLALATSRRSPGQEDVKTTGPAGAMNTLAWSKGQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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