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Report for CCDS44438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44438.1 Public Homo sapiens 10 SYNPO2L 24 110 108 CCDS HistoryNCBI Gene:79933Re-query CCDS DB by CCDS ID:44438.1Re-query CCDS DB by GeneID:79933See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394810.3 ENSP00000378289.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394810.3Link to Ensembl Protein Viewer:ENSP00000378289.2Re-query CCDS DB by Nucleotide ID:ENST00000394810Re-query CCDS DB by Protein ID:ENSP00000378289
Original member Current member NCBI NM_001114133.3 NP_001107605.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114133.3Link to Protein Sequence:NP_001107605.1Re-query CCDS DB by Nucleotide ID:NM_001114133Re-query CCDS DB by Protein ID:NP_001107605Link to BLAST:NP_001107605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107605.1 977 Q9H987-1 977 100% 0 0

Chromosomal Locations for CCDS 44438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 73646718 73648879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 73653139 73653653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 73654129 73654280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 73655818 73655922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGGGTGCTGAGGAGGAGGTGCTGGTCACACTATCAGGGGGAGCCCCCTGGGGCTTCCGACTTCATGGGG
GGGCCGAGCAGAGGAAACCGTTACAGGTGTCTAAGATTCGAAGACGGAGCCAGGCTGGCAGAGCAGGACT
CCGAGAGAGGGACCAGCTCTTGGCAATCAATGGGGTCTCTTGCACCAACCTCTCCCATGCCAGTGCCATG
AGCCTCATCGATGCCTCAGGAAATCAGCTTGTCCTCACTGTGCAGCGGTTAGCAGACGAGGGTCCTGTGC
AATCTCCATCTCCCCATGAGCTTCAGGTGCTGTCACCCTTATCTCCACTAAGTCCTGAGCCCCCTGGTGC
TCCAGTTCCTCAGCCTCTTCAGCCTGGGAGCCTTCGTTCACCTCCTGATAGTGAGGCTTACTACGGAGAG
ACTGACAGTGATGCTGATGGCCCTGCCACCCAGGAGAAGCCCCGTCGACCTCGCCGCCGAGGCCCCACAA
GGCCCACCCCTCCGGGTGCCCCACCTGATGAGGTCTACCTGTCTGACAGCCCTGCAGAGCCAGCACCTAC
TATCCCTGGCCCTCCCAGCCAGGGTGACAGCCGTGTGAGCTCCCCGTCTTGGGAGGATGGGGCAGCCCTT
CAGCCACCCCCAGCTGAGGCTCTGCTGTTACCCCATGGCCCCCTCCGACCTGGTCCTCATCTCATCCCTA
TGGTGGGGCCTGTTCCCCACCCAGTGGCAGAAGATCTTACTACCACCTACACCCAGAAGGCCAAGCAAGC
CAAACTGCAACGTGCAGAGAGCCTCCAAGAGAAGAGCATAAAAGAGGCCAAGACCAAATGCAGGACAATT
GCATCCCTGCTCACTGCAGCCCCCAACCCCCACTCCAAAGGGGTACTTATGTTTAAGAAACGGCGGCAGA
GAGCCAAGAAGTACACCCTGGTGAGCTTCGGGGCTGCTGCTGGGACAGGCGCTGAGGAGGAGGACGGCGT
TCCCCCCACGAGTGAGTCCGAGCTGGACGAAGAAGCCTTCTCTGACGCCCGCAGCCTCACCAATCAATCT
GACTGGGACAGTCCCTATCTGGACATGGAGCTTGCCAGGGCGGGCTCAAGAGCATCAGAGGGCCAGGGCT
CTGGGCTGGGAGGGCAGCTGAGTGAGGTCTCTGGGCGAGGGGTGCAGCTCTTTGAACAGCAGCGCCAGCG
CGCAGACTCCAGCACCCAGGAACTGGCACGGGTCGAACCAGCAGCCATGCTCAACGGGGAAGGCCTGCAG
TCACCACCTCGGGCCCAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACCCAGCCCCTTGCCGGCGCCTG
TAGCCAGCCCCAGACCCTTCCAACCAGGTGGTGGAGCCCCGACCCCAGCTCCAAGCATCTTTAACCGGTC
AGCCAGGCCCTTTACCCCGGGCCTACAAGGGCAGCGGCCAACTACCACCTCGGTTATTTTCCGGCCTTTA
GCCCCCAAAAGGGCGAACGACAGCCTGGGGGGCCTCAGCCCCGCCCCACCCCCCTTCTTGTCTTCGCAGG
GGCCCACCCCTCTGCCCAGCTTCACTTCAGGGGTTCCCAGCCACGCGCCAGTCTCTGGTTCCCCCAGCAC
CCCACGCTCCTCGGGCCCTGTGACAGCCACCAGCTCCCTGTACATCCCAGCCCCTAGTCGGCCTGTCACC
CCAGGTGGAGCTCCAGAGCCCCCCGCTCCTCCTAGCGCAGCTGCCATGACCTCCACCGCTTCTATCTTCC
TATCTGCGCCTTTGCGACCCTCTGCGCGCCCAGAGGCGCCTGCCCCAGGCCCAGGGGCTCCTGAGCCCCC
CAGCGCTCGCGAGCAGCGCATCTCTGTGCCAGCTGCCCGCACGGGTATCCTGCAGGAGGCCCGGCGCCGG
GGGACCCGGAAGCAGATGTTCCGGCCGGGAAAGGAGGAGACGAAGAACTCGCCCAACCCCGAGCTGCTAT
CGCTGGTACAGAACCTGGATGAAAAGCCTCGGGCCGGGGGTGCAGAATCTGGTCCTGAAGAAGATGCTCT
GAGCCTCGGGGCTGAAGCCTGCAACTTCATGCAGCCAGTAGGGGCCAGGAGTTACAAGACCCTGCCTCAC
GTGACACCTAAGACCCCCCCTCCAATGGCTCCCAAGACCCCGCCCCCTATGACTCCTAAGACTCCACCCC
CAGTGGCTCCTAAGCCCCCATCTCGAGGGCTCCTTGATGGGCTCGTGAATGGGGCAGCCTCTTCGGCTGG
AATCCCTGAGCCACCAAGGCTGCAGGGCAGGGGTGGGGAGCTGTTTGCTAAGCGGCAGAGCCGTGCGGAC
AGGTATGTGGTGGAAGGTACACCTGGTCCTGGTCTTGGCCCTCGGCCTAGAAGTCCTTCTCCTACCCCGT
CTCTGCCCCCTTCCTGGAAATATTCACCCAACATCCGTGCCCCGCCTCCTATTGCTTACAACCCACTGCT
CTCTCCCTTTTTCCCCCAGGCGGCCCGAACTCTCCCTAAGGCCCAATCCCAGGGGCCTCGGGCAACACCC
AAGCAGGGCATCAAGGCTCTAGATTTTATGCGGCATCAGCCCTATCAACTTAAAACTGCCATGTTCTGTT
TTGATGAGGTTCCCCCGACTCCTGGCCCTATCGCCTCAGGGTCCCCCAAAACTGCCCGAGTCCAGGAGAT
TCGCCGGTTTTCCACTCCGGCACCCCAGCCCACTGCAGAACCCCTGGCTCCCACTGTGCTTGCCCCCCGA
GCAGCCACTACACTGGATGAGCCCATCTGGAGAACAGAACTGGCCTCAGCCCCTGTTCCTAGCCCAGCCC
CTCCTCCAGAGGCTCCCAGGGGCCTTGGGGCTTCTCCCAGCTCCTGCGGTTTCCAGGTAGCCAGGCCCCG
ATTTTCAGCCACCAGAACAGGATTGCAAGCTCATGTGTGGAGGCCTGGGGCAGGGCACCAGTGA

Translation (977 aa):
MGAEEEVLVTLSGGAPWGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHASAM
SLIDASGNQLVLTVQRLADEGPVQSPSPHELQVLSPLSPLSPEPPGAPVPQPLQPGSLRSPPDSEAYYGE
TDSDADGPATQEKPRRPRRRGPTRPTPPGAPPDEVYLSDSPAEPAPTIPGPPSQGDSRVSSPSWEDGAAL
QPPPAEALLLPHGPLRPGPHLIPMVGPVPHPVAEDLTTTYTQKAKQAKLQRAESLQEKSIKEAKTKCRTI
ASLLTAAPNPHSKGVLMFKKRRQRAKKYTLVSFGAAAGTGAEEEDGVPPTSESELDEEAFSDARSLTNQS
DWDSPYLDMELARAGSRASEGQGSGLGGQLSEVSGRGVQLFEQQRQRADSSTQELARVEPAAMLNGEGLQ
SPPRAQSAPPEAAVLPPSPLPAPVASPRPFQPGGGAPTPAPSIFNRSARPFTPGLQGQRPTTTSVIFRPL
APKRANDSLGGLSPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVT
PGGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPGAPEPPSAREQRISVPAARTGILQEARRR
GTRKQMFRPGKEETKNSPNPELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPVGARSYKTLPH
VTPKTPPPMAPKTPPPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGIPEPPRLQGRGGELFAKRQSRAD
RYVVEGTPGPGLGPRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPKAQSQGPRATP
KQGIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARVQEIRRFSTPAPQPTAEPLAPTVLAPR
AATTLDEPIWRTELASAPVPSPAPPPEAPRGLGASPSSCGFQVARPRFSATRTGLQAHVWRPGAGHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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