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Report for CCDS44477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44477.1 Public Homo sapiens 10 RBM20 24 110 108 CCDS HistoryNCBI Gene:282996Re-query CCDS DB by CCDS ID:44477.1Re-query CCDS DB by GeneID:282996See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369519.4 ENSP00000358532.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369519.4Link to Ensembl Protein Viewer:ENSP00000358532.3Re-query CCDS DB by Nucleotide ID:ENST00000369519Re-query CCDS DB by Protein ID:ENSP00000358532
Original member Current member NCBI NM_001134363.3 NP_001127835.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134363.3Link to Protein Sequence:NP_001127835.2Re-query CCDS DB by Nucleotide ID:NM_001134363Re-query CCDS DB by Protein ID:NP_001127835Link to BLAST:NP_001127835.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127835.2 1227 Q5T481 1227 100% 0 0

Chromosomal Locations for CCDS 44477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 110644455 110644645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110780801 110781884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110783366 110783427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110784341 110784432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110784792 110784889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110797508 110797648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110799787 110799918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110810383 110810462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110812278 110812947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110820072 110820176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110821275 110821935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110823480 110823614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110831061 110831182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 110835868 110835978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3684 nt):
ATGGTGCTGGCAGCAGCCATGAGCCAGGACGCGGACCCCAGCGGTCCGGAGCAGCCGGACAGAGTTGCCT
GCAGTGTGCCTGGTGCCCGGGCGTCCCCGGCACCCTCCGGCCCGCGAGGGATGCAGCAGCCGCCGCCGCC
GCCCCAGCCACCGCCCCCGCCCCAAGCCGGCCTACCCCAGATCATCCAAAATGCCGCCAAGCTCCTGGAC
AAGAACCCATTCTCGGTCAGTAACCCGAACCCTCTGCTTCCTTCACCTGCCAGTCTCCAGCTGGCTCAAC
TGCAGGCCCAGCTCACCCTCCACCGGCTGAAGCTGGCACAGACAGCTGTCACCAACAACACTGCAGCCGC
CACAGTCCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAATCAACTGAGGCATCCG
TCTGTGATCACTGGCCCCCACGGCCATGCTGGGGTTCCCCAACATGCTGCAGCCATACCCAGTACCCGGT
TTCCCTCTAATGCAATTGCCTTTTCACCCCCCAGCCAGACACGAGGCCCCGGACCCTCCATGAACCTTCC
CAACCAGCCACCCAGTGCCATGGTGATGCATCCTTTCACTGGGGTAATGCCTCAGACCCCTGGCCAGCCA
GCAGTCATCTTGGGCATTGGCAAGACTGGGCCTGCTCCAGCTACAGCAGGATTCTATGAGTATGGCAAAG
CCAGCTCTGGCCAGACATATGGCCCTGAAACAGATGGTCAGCCTGGCTTCCTGCCATCCTCGGCCTCAAC
CTCGGGCAGTGTGACCTATGAAGGGCACTACAGCCACACAGGGCAGGATGGTCAAGCTGCCTTTTCCAAA
GATTTTTACGGACCCAACTCCCAAGGTTCACATGTGGCCAGCGGATTTCCAGCTGAGCAGGCTGGGGGCC
TGAAAAGTGAGGTCGGGCCACTGCTGCAGGGCACAAACAGCCAATGGGAGAGCCCCCATGGATTCTCGGG
CCAAAGCAAGCCTGATCTCACAGCAGGTCCCATGTGGCCTCCACCCCACAACCAGCCCTATGAGCTGTAC
GACCCCGAGGAACCAACCTCAGACAGGACACCTCCTTCCTTCGGGGGTCGGCTTAACAACAGCAAACAGG
GTTTTATCGGTGCTGGGCGGAGGGCCAAGGAGGACCAGGCGTTGCTATCTGTGCGGCCCCTGCAGGCTCA
TGAGCTGAACGACTTTCACGGTGTGGCCCCCCTCCACTTGCCGCATATCTGTAGCATCTGTGACAAGAAG
GTGTTTGATTTGAAGGACTGGGAGCTGCATGTGAAAGGGAAGCTGCACGCTCAGAAATGCCTGGTCTTCT
CTGAAAATGCTGGCATCCGGTGTATACTTGGTTCGGCAGAGGGAACATTGTGTGCTTCTCCCAACAGCAC
AGCTGTTTATAACCCTGCTGGGAATGAAGATTATGCCTCAAATCTTGGAACATCATACGTGCCCATTCCA
GCAAGGTCATTCACTCAGTCAAGCCCCACATTTCCTTTGGCTTCTGTGGGGACAACTTTTGCACAGCGGA
AAGGGGCTGGCCGTGTGGTGCACATCTGCAATCTCCCTGAAGGAAGCTGCACTGAGAATGACGTCATTAA
CCTGGGGCTGCCCTTTGGAAAGGTCACTAATTACATCCTCATGAAGTCGACTAATCAGGCCTTTTTAGAG
ATGGCTTACACAGAAGCTGCACAGGCCATGGTCCAGTATTATCAAGAAAAATCTGCTGTGATCAATGGTG
AGAAGTTGCTCATTCGGATGTCCAAGAGATACAAGGAATTGCAGCTCAAGAAACCCGGGAAGGCCGTGGC
TGCCATCATCCAGGACATCCATTCCCAGAGGGAGAGGGACATGTTCCGGGAAGCAGACAGATATGGCCCA
GAAAGGCCGCGGTCTCGTAGTCCGGTGAGCCGGTCACTCTCCCCGAGGTCCCACACTCCCAGCTTCACCT
CCTGCAGCTCTTCCCACAGCCCTCCGGGCCCCTCCCGGGCTGACTGGGGCAATGGCCGGGACTCCTGGGA
GCACTCTCCCTATGCCAGGAGGGAGGAAGAGCGAGACCCGGCTCCCTGGAGGGACAACGGAGATGACAAG
AGGGACAGGATGGACCCCTGGGCACATGATCGCAAACACCACCCCCGGCAACTGGACAAGGCTGAGTTGG
ACGAGCGACCAGAAGGAGGGAGGCCCCACCGGGAGAAGTACCCGAGATCTGGGTCTCCCAACCTGCCCCA
CTCTGTGTCCAGCTACAAAAGCCGTGAAGACGGCTACTACCGGAAAGAGCCCAAAGCCAAGTCGGACAAG
TATCTGAAGCAGCAGCAGGATGCCCCCGGGAGGTCCAGGAGGAAAGACGAGGCCAGGCTGCGGGAAAGCA
GACACCCCCATCCGGATGACTCAGGCAAGGAAGATGGGCTGGGGCCAAAGGTCACTAGGGCCCCTGAGGG
CGCCAAGGCCAAGCAGAATGAGAAAAATAAAACCAAGAGAACTGATAGAGACCAAGAAGGAGCTGATGAT
AGAAAAGAAAACACAATGGCAGAGAATGAGGCTGGAAAAGAGGAACAGGAGGGCATGGAAGAAAGCCCTC
AATCAGTGGGCAGACAGGAGAAAGAAGCAGAGTTCTCTGATCCGGAAAACACAAGGACAAAGAAGGAACA
AGATTGGGAGAGTGAAAGTGAGGCAGAGGGGGAGAGCTGGTATCCCACTAACATGGAGGAGCTGGTGACA
GTGGACGAGGTTGGGGAAGAAGAAGATTTTATCGTGGAACCAGACATCCCAGAGCTGGAAGAAATTGTGC
CCATTGACCAGAAAGACAAAATTTGCCCAGAAACATGTCTGTGTGTGACAACCACCTTAGACTTAGACCT
GGCCCAGGATTTCCCCAAGGAAGGAGTCAAGGCCGTAGGGAATGGGGCTGCAGAAATCAGCCTCAAGTCA
CCCAGAGAACTGCCCTCTGCTTCCACAAGCTGTCCCAGTGACATGGACGTGGAAATGCCTGGCCTAAATC
TGGATGCTGAGCGGAAGCCAGCTGAAAGTGAGACAGGCCTCTCCCTGGAGGATTCAGATTGCTACGAGAA
GGAGGCAAAGGGAGTGGAGAGCTCAGATGTTCATCCAGCCCCTACAGTCCAGCAAATGTCTTCCCCTAAG
CCAGCAGAGGAGAGGGCCCGGCAGCCAAGCCCATTTGTGGATGATTGCAAGACCAGGGGGACCCCCGAAG
ATGGGGCTTGTGAAGGCAGCCCCCTGGAGGAGAAAGCCAGCCCCCCCATCGAAACTGACCTCCAAAACCA
AGCTTGCCAAGAAGTGTTGACCCCGGAAAACTCCAGGTACGTGGAAATGAAATCTCTGGAGGTGAGGTCA
CCAGAGTACACTGAAGTGGAACTGAAACAGCCCCTTTCTTTGCCCTCTTGGGAACCAGAGGATGTGTTCA
GTGAACTTAGCATTCCTCTAGGGGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGG
GCTGTTCTACACGAGCGAGGAGACAGCAAAGATGAGCCACTGCCGCAGCGCTGTCCACTACAGGAACTTA
CAGAAATATTTGTCCCAGCTGGCCGAGGAGGGCCTCAAGGAGACCGAGGGGGCAGATAGCCCGAGGCCAG
AGGACAGCGGAATCGTGCCACGCTTCGAAAGGAAAAAGCTCTGA

Translation (1227 aa):
MVLAAAMSQDADPSGPEQPDRVACSVPGARASPAPSGPRGMQQPPPPPQPPPPPQAGLPQIIQNAAKLLD
KNPFSVSNPNPLLPSPASLQLAQLQAQLTLHRLKLAQTAVTNNTAAATVLNQVLSKVAMSQPLFNQLRHP
SVITGPHGHAGVPQHAAAIPSTRFPSNAIAFSPPSQTRGPGPSMNLPNQPPSAMVMHPFTGVMPQTPGQP
AVILGIGKTGPAPATAGFYEYGKASSGQTYGPETDGQPGFLPSSASTSGSVTYEGHYSHTGQDGQAAFSK
DFYGPNSQGSHVASGFPAEQAGGLKSEVGPLLQGTNSQWESPHGFSGQSKPDLTAGPMWPPPHNQPYELY
DPEEPTSDRTPPSFGGRLNNSKQGFIGAGRRAKEDQALLSVRPLQAHELNDFHGVAPLHLPHICSICDKK
VFDLKDWELHVKGKLHAQKCLVFSENAGIRCILGSAEGTLCASPNSTAVYNPAGNEDYASNLGTSYVPIP
ARSFTQSSPTFPLASVGTTFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLE
MAYTEAAQAMVQYYQEKSAVINGEKLLIRMSKRYKELQLKKPGKAVAAIIQDIHSQRERDMFREADRYGP
ERPRSRSPVSRSLSPRSHTPSFTSCSSSHSPPGPSRADWGNGRDSWEHSPYARREEERDPAPWRDNGDDK
RDRMDPWAHDRKHHPRQLDKAELDERPEGGRPHREKYPRSGSPNLPHSVSSYKSREDGYYRKEPKAKSDK
YLKQQQDAPGRSRRKDEARLRESRHPHPDDSGKEDGLGPKVTRAPEGAKAKQNEKNKTKRTDRDQEGADD
RKENTMAENEAGKEEQEGMEESPQSVGRQEKEAEFSDPENTRTKKEQDWESESEAEGESWYPTNMEELVT
VDEVGEEEDFIVEPDIPELEEIVPIDQKDKICPETCLCVTTTLDLDLAQDFPKEGVKAVGNGAAEISLKS
PRELPSASTSCPSDMDVEMPGLNLDAERKPAESETGLSLEDSDCYEKEAKGVESSDVHPAPTVQQMSSPK
PAEERARQPSPFVDDCKTRGTPEDGACEGSPLEEKASPPIETDLQNQACQEVLTPENSRYVEMKSLEVRS
PEYTEVELKQPLSLPSWEPEDVFSELSIPLGVEFVVPRTGFYCKLCGLFYTSEETAKMSHCRSAVHYRNL
QKYLSQLAEEGLKETEGADSPRPEDSGIVPRFERKKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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