NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44493.1 Public Homo sapiens 10 TEX36 24 110 108 CCDS HistoryNCBI Gene:387718Re-query CCDS DB by CCDS ID:44493.1Re-query CCDS DB by GeneID:387718See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368821.4 ENSP00000357811.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368821.4Link to Ensembl Protein Viewer:ENSP00000357811.3Re-query CCDS DB by Nucleotide ID:ENST00000368821Re-query CCDS DB by Protein ID:ENSP00000357811
Original member Current member NCBI NM_001128202.3 NP_001121674.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128202.3Link to Protein Sequence:NP_001121674.1Re-query CCDS DB by Nucleotide ID:NM_001128202Re-query CCDS DB by Protein ID:NP_001121674Link to BLAST:NP_001121674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121674.1 186 Q5VZQ5 186 100% 0 0

Chromosomal Locations for CCDS 44493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125655900 125656196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125661021 125661101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125661846 125661977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125682939 125682989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGACCAAAGGGCGACGCTTCAACCCACCTTCAGACAAGGATGGGAGATGGTTCCCTCACATCGGGCTAA
CGCAAAAGACACCAGAATCCATCACCAGTGCTACGTCAAAAGAGCCCCAGAGTCCACACTTGCCTCGGCA
AGCGGAGGGGAAGCTGCCGCCCATATACAAAGTCCGGGAGAAGCAAGCAGTGAATAACCAGTTCCCCTTC
TCCGTGCATGACAATCGGCACAGCTTGGAGAACTCTGGATGCTACCTTGACTCCGGCCTGGGACGTAAGA
AGATCTCTCCAGATAAGAGGCAACATGTTTCAAGAAATTTTAATCTCTGGGCATGTGACTATGTTCCATC
TTGTCTTGATGGCTTTTCAAATAACCAAATATCATACGTATATAAAGAAGCCATGGTGGTCTCAAGCTTC
AGACGCTTTCCACGATGCTATAAAGAGATATGGAACGCTTTTACATTTCTTCCTGAGAGAAGCTATACAG
AGGTTTTGAAAAAGAAGCCCAAAGTAAGGTTCACTGTTGACAAAAAGGTTGTTTCTTCACTGGAGTCCTA
A

Translation (186 aa):
MTKGRRFNPPSDKDGRWFPHIGLTQKTPESITSATSKEPQSPHLPRQAEGKLPPIYKVREKQAVNNQFPF
SVHDNRHSLENSGCYLDSGLGRKKISPDKRQHVSRNFNLWACDYVPSCLDGFSNNQISYVYKEAMVVSSF
RRFPRCYKEIWNAFTFLPERSYTEVLKKKPKVRFTVDKKVVSSLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH