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Report for CCDS45315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45315.1 Public Homo sapiens 15 SH2D7 24 110 108 CCDS HistoryNCBI Gene:646892Re-query CCDS DB by CCDS ID:45315.1Re-query CCDS DB by GeneID:646892See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45315.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328828.6 ENSP00000327846.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328828.6Link to Ensembl Protein Viewer:ENSP00000327846.5Re-query CCDS DB by Nucleotide ID:ENST00000328828Re-query CCDS DB by Protein ID:ENSP00000327846
Original member Current member NCBI NM_001101404.2 NP_001094874.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101404.2Link to Protein Sequence:NP_001094874.1Re-query CCDS DB by Nucleotide ID:NM_001101404Re-query CCDS DB by Protein ID:NP_001094874Link to BLAST:NP_001094874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094874.1 451 A6NKC9 451 100% 0 0

Chromosomal Locations for CCDS 45315.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78092585 78092760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78094112 78094201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78097929 78098094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78098384 78098596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78100899 78101558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78103465 78103515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGAGGACAGCCTAAAGCAGCTCAGCCTGGGGAGAGATCCTGAGGGGGCAGGGGACAGCCAGGCCCTGG
CTGAGCTCCAGGAGCTTGCCCTGAAGTGGTTCATGGAGACACAGGCCCCCTTCATTCTGCAGAACGGTGC
CCTGCCTCCCTGGTTTCATGGATTCATCACCCGCAAGCAGACGGAGCAGCTACTCAGGGACAAAGCTCTT
GGTTCCTTCCTTATCCGCCTCAGTGACCGAGCCACTGGCTACATCTTGTCCTACAGGGGCAGTGATCGCT
GCCGACATTTTGTCATCAACCAGCTTCGAAACCGGCGTTACATCATCTCAGGAGACACCCAGAGCCACAG
CACCCTGGCTGAGCTTGTGCACCATTACCAGGAGGCACAGCTCGAGCCCTTCAAAGAGATGCTGACTGCT
GCCTGCCCCCGGCCAGAGGACAATGATCTGTATGATGCCATCACCCGGGGCCTCCACCAGACCATCGTGG
ACCCAGAAAACCCACCTGCCACGGCATTCCTCACAGTGGTCCCCGACAAGGCCGCCAGCCCCCGCTCTTC
TCCAAAGCCCCAGGTCTCCTTCCTCCATGCACAGAAAAGCCTGGATGTGAGTCCCCGGAACCTCTCCCAG
GAGGAAAGCATGGAGGCTCCCATCAGAGTGTCTCCACTCCCTGAGAAGAGTTCCTCCCTCCTGGAAGAGT
CTTTTGGAGGCCCCAGTGACATCATCTATGCAGACCTGAGGAGGATGAACCAGGCACGGCTAGGCTTGGG
CACAGAGGGGTCCGGCAGGCATGGGCCAGTTCCAGCTGGCAGCCAGGCCTACTCCCCAGGCAGGGAGGCC
CAAAGGAGACTCTCAGATGGAGAACAGAACAGGCCTGATGGCCTGGGGCCTGTCCTTTCTGGGGTGAGCC
CAGACCAGGGTCCCACAGAGTCTCCCACTTCCTGGGGATGTTCTGATGCCATGGGATCCCTGGGGGCTAC
CTGGAGGCAGGAGTTTCCAAAGCTGAGCCAAGAGGCTCAGCCCTGCTCCCAGGGCAGCTCTGCAGATATC
TATGAGTTCATCGGGACAGAAGGCCTCCTGCAAGAGGCCAGGGACACACCAGACCAAGAAGGCAGCACCT
ATGAGCAGATCCCAGCTTGCTGGGGTGGCCCAGCCAGGGCCCCACATCCTGGGGCCAGTCCCACATATAG
CCCATGGGTCCATGGCTACAAGAGGATCTCAGGGACCCCAGAGCTCTCAGAGCCTGGGAACACCTATGAA
CAGATCCCAGCAACCAAGAGCAAGGAGACTGGACGGACACACAAGCCTGACAAGCTTCGGAGGCTCTTCT
TCACGTACAGGAAGCACAAATTCTGA

Translation (451 aa):
MEDSLKQLSLGRDPEGAGDSQALAELQELALKWFMETQAPFILQNGALPPWFHGFITRKQTEQLLRDKAL
GSFLIRLSDRATGYILSYRGSDRCRHFVINQLRNRRYIISGDTQSHSTLAELVHHYQEAQLEPFKEMLTA
ACPRPEDNDLYDAITRGLHQTIVDPENPPATAFLTVVPDKAASPRSSPKPQVSFLHAQKSLDVSPRNLSQ
EESMEAPIRVSPLPEKSSSLLEESFGGPSDIIYADLRRMNQARLGLGTEGSGRHGPVPAGSQAYSPGREA
QRRLSDGEQNRPDGLGPVLSGVSPDQGPTESPTSWGCSDAMGSLGATWRQEFPKLSQEAQPCSQGSSADI
YEFIGTEGLLQEARDTPDQEGSTYEQIPACWGGPARAPHPGASPTYSPWVHGYKRISGTPELSEPGNTYE
QIPATKSKETGRTHKPDKLRRLFFTYRKHKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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