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Report for CCDS45483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45483.1 Public Homo sapiens 16 SALL1 24 110 108 CCDS HistoryNCBI Gene:6299Re-query CCDS DB by CCDS ID:45483.1Re-query CCDS DB by GeneID:6299See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000570206.2 ENSP00000456777.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570206.2Link to Ensembl Protein Viewer:ENSP00000456777.2Re-query CCDS DB by Nucleotide ID:ENST00000570206Re-query CCDS DB by Protein ID:ENSP00000456777
Original member Current member NCBI NM_001127892.2 NP_001121364.1 Accepted alive Link to Nucleotide Sequence:NM_001127892.2Link to Protein Sequence:NP_001121364.1Re-query CCDS DB by Nucleotide ID:NM_001127892Re-query CCDS DB by Protein ID:NP_001121364Link to BLAST:NP_001121364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121364.1 1227 Q9NSC2-2 1227 100% 0 0

Chromosomal Locations for CCDS 45483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 51137112 51137552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 51138688 51141930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3684 nt):
ATGAATGACACAGTTAACAAAACAGATCAAGTGGACTGCAGCGACCTTTCAGAACACAACGGACTTGACA
GGGAAGAGTCCATGGAGGTGGAGGCCCCGGTTGCTAACAAAAGCGGCAGCGGCACTTCCAGCGGCAGCCA
CAGCAGTACCGCCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCAGCTCCTCCACA
GGTACCTCAGCGATCACAACCTCTCTACCTCAACTCGGGGACCTGACAACACTGGGCAACTTCTCCGTAA
TCAACAGCAACGTCATCATCGAGAACCTCCAGAGCACCAAGGTGGCGGTGGCCCAGTTCTCCCAGGAAGC
GAGGTGCGGCGGGGCCTCTGGGGGCAAGCTGGCCGTCCCAGCCCTCATGGAACAACTCCTAGCTCTGCAG
CAGCAGCAGATCCACCAGCTGCAATTGATCGAACAGATTCGTCACCAAATATTGCTGTTGGCTTCTCAGA
ATGCAGACTTGCCAACATCTTCTAGTCCTTCTCAAGGTACTTTACGAACATCTGCCAACCCCTTGTCCAC
GCTAAGTTCCCATTTATCTCAGCAGCTGGCAGCAGCAGCTGGATTGGCACAGAGCCTCGCCAGCCAATCT
GCCAGCATTAGTGGTGTGAAACAGCTACCCCCAATCCAGCTACCTCAGAGCAGTTCTGGCAACACCATCA
TTCCATCCAACAGCGGCTCTTCTCCCAATATGAACATATTGGCAGCGGCAGTTACCACCCCGTCCTCTGA
AAAAGTGGCTTCAAGTGCTGGGGCCTCCCATGTCAGCAACCCAGCGGTCTCATCATCGTCCTCACCAGCT
TTTGCAATAAGCAGTTTATTAAGTCCTGCGTCTAATCCACTTCTACCTCAGCAAGCCTCCGCTAACTCGG
TTTTCCCCAGCCCTTTGCCCAACATCGGAACAACTGCAGAGGATTTAAACTCCTTGTCTGCCTTGGCCCA
GCAAAGAAAAAGCAAGCCACCAAATGTCACTGCCTTTGAAGCGAAAAGTACTTCCGATGAGGCATTCTTC
AAACACAAGTGCAGGTTCTGCGCGAAGGTCTTTGGGAGTGACAGTGCCTTGCAGATCCACTTGCGTTCCC
ATACCGGAGAGAGGCCATTCAAGTGCAACATCTGCGGGAACAGGTTCTCCACCAAGGGGAATCTGAAAGT
CCACTTTCAGCGCCACAAAGAGAAATACCCTCATATCCAGATGAACCCCTATCCTGTGCCTGAGCATTTG
GACAATATCCCCACGAGTACTGGCATCCCATATGGCATGTCCATCCCTCCAGAGAAGCCAGTCACCAGCT
GGCTAGACACCAAACCAGTCCTGCCTACTCTGACCACTTCAGTCGGCCTGCCGTTGCCCCCAACCCTCCC
AAGCCTCATACCCTTCATCAAGACGGAAGAGCCAGCCCCCATCCCCATCAGCCATTCTGCCACCAGCCCC
CCAGGCTCAGTCAAAAGTGACTCCGGGGGCCCTGAGTCAGCCACAAGAAACCTAGGTGGGCTCCCAGAGG
AAGCCGAAGGGTCCACTCTGCCACCCTCTGGTGGCAAAAGCGAAGAGAGTGGCATGGTCACCAACTCAGT
CCCGACGGCGAGCAGTAGCGTCCTGAGCTCCCCAGCGGCAGACTGCGGCCCCGCGGGCAGTGCCACCACC
TTCACCAACCCTTTGTTGCCGCTCATGTCCGAGCAGTTCAAGGCCAAGTTTCCTTTTGGGGGACTCCTGG
ACTCAGCTCAGGCATCAGAGACGTCCAAGCTTCAGCAACTGGTAGAAAACATTGACAAGAAGGCCACTGA
CCCCAATGAGTGCATCATCTGCCACCGGGTTCTCAGCTGCCAGAGCGCCTTGAAAATGCACTACAGGACA
CACACTGGGGAGAGGCCCTTTAAGTGTAAGATCTGTGGCCGGGCTTTCACCACGAAAGGGAATCTTAAAA
CCCACTACAGTGTCCATCGTGCTATGCCCCCGCTCAGAGTCCAGCATTCCTGCCCCATCTGCCAGAAGAA
GTTCACGAACGCTGTGGTCCTGCAGCAGCACATCCGAATGCATATGGGAGGCCAGATCCCCAACACCCCA
GTCCCCGACAGCTACTCTGAGTCCATGGAGTCTGACACAGGTTCCTTTGATGAGAAAAATTTTGATGACC
TAGACAACTTCTCTGATGAAAACATGGAAGACTGTCCTGAGGGCAGCATCCCTGATACACCTAAGTCTGC
AGACGCCTCCCAAGACAGCTTATCCTCTTCGCCTTTGCCCCTCGAGATGTCGAGCATCGCTGCTTTGGAA
AATCAGATGAAGATGATCAATGCTGGCCTGGCAGAGCAGCTACAGGCCAGCCTGAAGTCAGTGGAGAATG
GGTCCATCGAGGGGGATGTCCTGACCAATGATTCATCCTCAGTGGGTGGTGACATGGAAAGCCAAAGTGC
TGGCAGCCCAGCCATCTCAGAGTCTACCTCTTCCATGCAGGCTCTGTCCCCGTCCAACAGCACGCAGGAG
TTCCACAAGTCACCCAGCATTGAGGAGAAACCACAGAGAGCGGTCCCAAGCGAGTTTGCCAATGGTTTGT
CTCCCACCCCAGTGAATGGTGGGGCTTTGGATTTGACATCTAGTCACGCAGAGAAAATCATCAAAGAAGA
TTCTTTGGGGATCCTCTTCCCTTTTAGAGACCGGGGTAAATTTAAAAACACTGCTTGTGACATTTGTGGC
AAAACATTTGCTTGTCAGAGTGCCTTGGACATTCACTATAGAAGTCATACCAAAGAGAGACCATTTATTT
GCACAGTTTGCAATCGTGGCTTTTCCACAAAGGGTAATTTGAAGCAGCACATGTTGACACATCAGATGCG
AGATCTGCCATCCCAGCTCTTTGAGCCCAGTTCCAACCTTGGCCCCAATCAGAACTCAGCGGTGATTCCC
GCCAACTCGTTGTCATCTCTCATCAAGACAGAGGTCAACGGCTTCGTGCATGTTTCTCCTCAGGACAGTA
AGGACACCCCCACCAGTCACGTCCCGTCTGGGCCTCTGTCTTCCTCTGCCACATCCCCAGTTCTGCTCCC
TGCTCTGCCCAGGAGAACTCCCAAGCAGCACTACTGCAACACATGTGGCAAAACCTTCTCCTCATCGAGT
GCCCTGCAGATTCACGAGAGAACTCACACTGGAGAGAAACCCTTTGCTTGCACTATTTGTGGAAGAGCTT
TCACGACTAAAGGCAATCTTAAGGTACACATGGGCACTCACATGTGGAATAGCACCCCTGCACGACGGGG
TCGGCGGCTCTCTGTGGATGGCCCCATGACATTTCTAGGAGGCAATCCCGTCAAGTTCCCAGAAATGTTC
CAGAAGGATTTGGCGGCAAGATCAGGAAGTGGGGATCCTTCCAGCTTCTGGAATCAGTATGCAGCAGCGC
TCTCCAACGGGCTGGCGATGAAGGCCAACGAGATCTCCGTCATTCAGAACGGTGGCATCCCTCCAATTCC
TGGAAGCCTCGGCAGTGGGAACAGCTCACCTGTTAGTGGGCTGACGGGAAACCTGGAGAGGCTCCAGAAC
TCAGAGCCCAATGCTCCCCTGGCCGGCCTGGAGAAAATGGCAAGCAGTGAGAACGGAACCAACTTCCGCT
TCACCCGCTTCGTGGAGGACAGCAAGGAGATCGTCACGAGTTAA

Translation (1227 aa):
MNDTVNKTDQVDCSDLSEHNGLDREESMEVEAPVANKSGSGTSSGSHSSTAPSSSSSSSSSSGGGGSSST
GTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQFSQEARCGGASGGKLAVPALMEQLLALQ
QQQIHQLQLIEQIRHQILLLASQNADLPTSSSPSQGTLRTSANPLSTLSSHLSQQLAAAAGLAQSLASQS
ASISGVKQLPPIQLPQSSSGNTIIPSNSGSSPNMNILAAAVTTPSSEKVASSAGASHVSNPAVSSSSSPA
FAISSLLSPASNPLLPQQASANSVFPSPLPNIGTTAEDLNSLSALAQQRKSKPPNVTAFEAKSTSDEAFF
KHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEHL
DNIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPTLPSLIPFIKTEEPAPIPISHSATSP
PGSVKSDSGGPESATRNLGGLPEEAEGSTLPPSGGKSEESGMVTNSVPTASSSVLSSPAADCGPAGSATT
FTNPLLPLMSEQFKAKFPFGGLLDSAQASETSKLQQLVENIDKKATDPNECIICHRVLSCQSALKMHYRT
HTGERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTP
VPDSYSESMESDTGSFDEKNFDDLDNFSDENMEDCPEGSIPDTPKSADASQDSLSSSPLPLEMSSIAALE
NQMKMINAGLAEQLQASLKSVENGSIEGDVLTNDSSSVGGDMESQSAGSPAISESTSSMQALSPSNSTQE
FHKSPSIEEKPQRAVPSEFANGLSPTPVNGGALDLTSSHAEKIIKEDSLGILFPFRDRGKFKNTACDICG
KTFACQSALDIHYRSHTKERPFICTVCNRGFSTKGNLKQHMLTHQMRDLPSQLFEPSSNLGPNQNSAVIP
ANSLSSLIKTEVNGFVHVSPQDSKDTPTSHVPSGPLSSSATSPVLLPALPRRTPKQHYCNTCGKTFSSSS
ALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPARRGRRLSVDGPMTFLGGNPVKFPEMF
QKDLAARSGSGDPSSFWNQYAAALSNGLAMKANEISVIQNGGIPPIPGSLGSGNSSPVSGLTGNLERLQN
SEPNAPLAGLEKMASSENGTNFRFTRFVEDSKEIVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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