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Report for CCDS45594.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45594.3 Public Homo sapiens 17 RNASEK 24 110 108 CCDS HistoryNCBI Gene:440400Re-query CCDS DB by CCDS ID:45594.3Re-query CCDS DB by GeneID:440400See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 45594.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by conservation in other higher primate species.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45594.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593646.6 ENSP00000468923.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000593646.6Link to Ensembl Protein Viewer:ENSP00000468923.2Re-query CCDS DB by Nucleotide ID:ENST00000593646Re-query CCDS DB by Protein ID:ENSP00000468923
Original member Current member NCBI NM_001004333.5 NP_001004333.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004333.5Link to Protein Sequence:NP_001004333.3Re-query CCDS DB by Nucleotide ID:NM_001004333Re-query CCDS DB by Protein ID:NP_001004333Link to BLAST:NP_001004333.3

Chromosomal Locations for CCDS 45594.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7012684 7012761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7013666 7013742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7014145 7014286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGGCGTCGCTCCTGTGCTGTGGGCCGAAGCTGGCCGCCTGCGGCATCGTCCTCAGCGCCTGGGGAGTGA
TCATGTTGATAATGCTCGGAATATTTTTCAATGTCCATTCCGCTGTGTTGATTGAGGACGTTCCCTTCAC
GGAGAAAGATTTTGAGAATGGCCCCCAGAACATATACAACCTTTACGAGCAAGTCAGCTACAACTGTTTC
ATCGCTGCAGGCCTTTACCTCCTCCTCGGAGGCTTCTCTTTCTGCCAAGTTCGGCTCAATAAGCGCAAGG
AATACATGGTGCGCTAG

Translation (98 aa):
MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVSYNCF
IAAGLYLLLGGFSFCQVRLNKRKEYMVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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