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Report for CCDS45789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45789.1 Public Homo sapiens 17 SEC14L1 24 110 108 CCDS HistoryNCBI Gene:6397Re-query CCDS DB by CCDS ID:45789.1Re-query CCDS DB by GeneID:6397See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431431.6 ENSP00000389838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431431.6Link to Ensembl Protein Viewer:ENSP00000389838.1Re-query CCDS DB by Nucleotide ID:ENST00000431431Re-query CCDS DB by Protein ID:ENSP00000389838
Original member Current member EBI ENST00000591437.5 ENSP00000467934.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591437.5Link to Ensembl Protein Viewer:ENSP00000467934.1Re-query CCDS DB by Nucleotide ID:ENST00000591437Re-query CCDS DB by Protein ID:ENSP00000467934
Original member Current member NCBI NM_001144001.2 NP_001137473.2 Accepted alive Link to Nucleotide Sequence:NM_001144001.2Link to Protein Sequence:NP_001137473.2Re-query CCDS DB by Nucleotide ID:NM_001144001Re-query CCDS DB by Protein ID:NP_001137473Link to BLAST:NP_001137473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137473.2 681 Q92503-3 681 100% 0 0

Chromosomal Locations for CCDS 45789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 77190842 77190952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77191181 77191312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77193421 77193549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77194677 77194911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77196202 77196311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77200484 77200673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77203570 77203658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77205276 77205346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77206229 77206400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77206728 77206862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77209342 77209476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77211950 77212201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77213314 77213492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 77213918 77214023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGTTCGTGGGCAGTGACACTGTGAATGAATTCAAGAGCGAAGATGGGGCTATTCATGTCATTGAAAGGC
GCTGCAAGCTGGATGTAGATGCACCCAGACTGCTGAAGAAGATTGCAGGAGTTGATTATGTTTATTTTGT
CCAGAAAAACTCACTGAATTCTCGGGAACGTACTTTGCACATTGAGGCTTATAATGAAACGTTTTCCAAT
CGGGTCATCATTAATGAGCATTGCTGCTACACCGTTCACCCTGAAAATGAAGATTGGACCTGTTTTGAAC
AGTCTGCAAGTTTAGATATTAAATCTTTCTTTGGTTTTGAAAGTACAGTGGAAAAAATTGCAATGAAACA
ATATACCAGCAACATTAAAAAAGGAAAGGAAATCATCGAATACTACCTTCGCCAATTAGAAGAAGAAGGC
ATAACCTTTGTGCCCCGTTGGAGTCCGCCTTCCATCACGACCTCTTCAGAGACATCTTCATCATCCTCCA
AGAAACAAGCAGCGTCCATGGCCGTCGTCATCCCAGAAGCTGCCCTCAAGGAGGGGCTGAGTGGTGATGC
CCTCAGCAGCCCCAGCGCACCTGAGCCCGTGGTGGGCACCCCTGACGACAAACTAGATGCCGACTACATC
AAGAGATACCTGGGCGATTTGACTCCGCTGCAGGAGAGCTGCCTCATTAGACTTCGCCAGTGGCTCCAGG
AGACCCACAAGGGCAAAATTCCAAAAGATGAGCATATTCTTCGGTTCCTCCGTGCACGGGATTTTAATAT
TGACAAAGCCAGAGAGATCATGTGTCAGTCTTTGACGTGGAGAAAGCAGCATCAGGTAGACTACATTCTT
GAAACCTGGACCCCTCCTCAGGTCCTTCAGGATTACTACGCGGGAGGCTGGCATCATCACGACAAAGATG
GGCGGCCCCTCTACGTGCTCAGGCTGGGGCAGATGGACACCAAAGGCTTGGTGAGAGCGCTCGGGGAGGA
AGCCCTGCTGAGATACGTTCTCTCCATAAATGAAGAAGGGCTAAGGCGATGCGAAGAGAATACAAAAGTC
TTTGGTCGGCCTATCAGCTCATGGACCTGCCTGGTGGACTTGGAAGGGCTGAACATGCGCCACTTGTGGA
GACCTGGTGTGAAAGCGCTGCTGCGGATCATCGAGGTGGTGGAGGCCAACTACCCTGAGACACTGGGCCG
CCTTCTCATCCTGCGGGCGCCCAGGGTATTTCCTGTGCTCTGGACGCTGGTTAGTCCGTTCATTGATGAC
AACACCAGAAGGAAGTTCCTCATTTATGCAGGAAATGACTACCAGGGTCCTGGAGGCCTGCTGGATTACA
TCGACAAAGAGATTATTCCAGATTTCCTGAGTGGGGAGTGCATGTGCGAAGTGCCAGAGGGTGGACTGGT
CCCCAAATCTCTGTACCGGACTGCAGAGGAGCTGGAGAACGAAGACCTGAAGCTCTGGACTGAGACCATC
TACCAGTCTGCAAGCGTCTTCAAAGGAGCCCCACATGAGATTCTCATTCAGATTGTGGATGCCTCGTCAG
TCATCACTTGGGATTTCGACGTGTGCAAAGGGGACATTGTGTTTAACATCTATCACTCCAAGAGGTCGCC
ACAACCACCCAAAAAGGACTCCCTGGGAGCCCACAGCATCACCTCTCCGGGTGGGAACAATGTGCAGCTC
ATAGACAAAGTCTGGCAGCTGGGCCGCGACTACAGCATGGTGGAGTCGCCTCTGATCTGCAAAGAAGGAG
AAAGCGTGCAGGGTTCCCATGTGACCAGGTGGCCGGGCTTCTACATCCTGCAGTGGAAATTCCACAGCAT
GCCTGCGTGCGCCGCCAGCAGCCTTCCCCGGGTGGACGACGTGCTTGCGTCCCTGCAGGTCTCTTCGCAC
AAGTGTAAAGTGATGTACTACACCGAGGTGATCGGCTCGGAGGATTTCAGAGGTTCCATGACGAGCCTGG
AGTCCAGCCACAGCGGCTTCTCCCAGCTGAGTGCCGCCACCACCTCCTCCAGCCAGTCCCACTCCAGCTC
CATGATCTCCAGGTAG

Translation (681 aa):
MFVGSDTVNEFKSEDGAIHVIERRCKLDVDAPRLLKKIAGVDYVYFVQKNSLNSRERTLHIEAYNETFSN
RVIINEHCCYTVHPENEDWTCFEQSASLDIKSFFGFESTVEKIAMKQYTSNIKKGKEIIEYYLRQLEEEG
ITFVPRWSPPSITTSSETSSSSSKKQAASMAVVIPEAALKEGLSGDALSSPSAPEPVVGTPDDKLDADYI
KRYLGDLTPLQESCLIRLRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYIL
ETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKV
FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDD
NTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGECMCEVPEGGLVPKSLYRTAEELENEDLKLWTETI
YQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKRSPQPPKKDSLGAHSITSPGGNNVQL
IDKVWQLGRDYSMVESPLICKEGESVQGSHVTRWPGFYILQWKFHSMPACAASSLPRVDDVLASLQVSSH
KCKVMYYTEVIGSEDFRGSMTSLESSHSGFSQLSAATTSSSQSHSSSMISR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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