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Report for CCDS46626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46626.1 Public Homo sapiens 20 LSM14B 24 110 108 CCDS HistoryNCBI Gene:149986Re-query CCDS DB by CCDS ID:46626.1Re-query CCDS DB by GeneID:149986See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279068.11 ENSP00000279068.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279068.11Link to Ensembl Protein Viewer:ENSP00000279068.5Re-query CCDS DB by Nucleotide ID:ENST00000279068Re-query CCDS DB by Protein ID:ENSP00000279068
Original member Current member NCBI NM_144703.3 NP_653304.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144703.3Link to Protein Sequence:NP_653304.2Re-query CCDS DB by Nucleotide ID:NM_144703Re-query CCDS DB by Protein ID:NP_653304Link to BLAST:NP_653304.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653304.2 385 Q9BX40-1 385 100% 0 0

Chromosomal Locations for CCDS 46626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62122667 62122793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62124617 62124780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62126304 62126439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62129785 62129952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62130219 62130296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62130530 62130691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62131356 62131506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62133290 62133461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGAGCGGCTCCTCAGGCACCCCGTATCTGGGCAGCAAGATCAGCCTCATCTCCAAGGCGCAGATCCGCT
ACGAGGGCATTCTCTACACCATCGACACCGACAACTCCACCGTGGCGCTCGCCAAAGTGAGGTCCTTTGG
CACTGAAGACCGTCCCACAGATAGGCCTGCGCCCCCCAGAGAGGAGATTTATGAGTACATCATTTTCCGA
GGAAGTGACATCAAGGATATCACTGTGTGTGAACCTCCGAAAGCTCAGCACACACTCCCGCAGGATCCCG
CCATTGTTCAGTCTTCCCTGGGTTCTGCCTCCGCCTCGCCCTTCCAGCCGCACGTGCCTTACAGCCCTTT
CCGAGGGATGGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCCAGCAGTATGCCGCCTCCCTG
GGTCTAGGAGCTGGTTTTCCATCCATCCCAGTCGGCAAGAGCCCCATGGTGGAGCAGGCTGTGCAGACTG
GTTCTGCTGACAACCTGAATGCTAAAAAGCTGTTACCTGGCAAGGGCACCACAGGGACGCAGCTCAACGG
TCGTCAGGCCCAGCCGAGCAGCAAGACGGCCAGCGATGTAGTCCAGCCGGCAGCTGTGCAAGCTCAAGGG
CAGGTGAATGACGAGAACAGAAGACCTCAGAGGAGGCGATCAGGAAACAGGCGAACAAGGAATCGCTCCA
GAGGGCAAAACCGTCCAACTAACGTTAAGGAAAACACAATCAAATTTGAGGGTGACTTTGATTTCGAGAG
TGCAAATGCCCAGTTCAACCGAGAGGAGCTTGACAAAGAATTTAAGAAGAAACTGAATTTTAAAGATGAC
AAGGCTGAGAAGGGGGAAGAGAAGGACCTGGCTGTGGTGACCCAGAGTGCCGAAGCGCCCGCTGAGGAAG
ACCTTCTGGGGCCCAACTGCTACTATGACAAATCCAAGTCGTTCTTCGACAACATCTCTTCTGAACTCAA
GACCAGCTCCAGGCGGACGACGTGGGCCGAAGAGAGGAAGCTCAACACAGAGACCTTTGGGGTGTCAGGG
AGGTTTCTTCGTGGCCGCAGTTCTCGGGGCGGATTCCGAGGAGGCAGGGGCAATGGGACCACCCGTCGCA
ACCCCACTTCCCACAGGGCCGGGACTGGCAGGGTGTGA

Translation (385 aa):
MSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFR
GSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMAPYGPLAASSLLSQQYAASL
GLGAGFPSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAAVQAQG
QVNDENRRPQRRRSGNRRTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDD
KAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSG
RFLRGRSSRGGFRGGRGNGTTRRNPTSHRAGTGRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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