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Report for CCDS47030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47030.1 Public Homo sapiens 4 TAPT1 24 110 108 CCDS HistoryNCBI Gene:202018Re-query CCDS DB by CCDS ID:47030.1Re-query CCDS DB by GeneID:202018See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405303.7 ENSP00000385347.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405303.7Link to Ensembl Protein Viewer:ENSP00000385347.2Re-query CCDS DB by Nucleotide ID:ENST00000405303Re-query CCDS DB by Protein ID:ENSP00000385347
Original member Current member NCBI NM_153365.3 NP_699196.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153365.3Link to Protein Sequence:NP_699196.2Re-query CCDS DB by Nucleotide ID:NM_153365Re-query CCDS DB by Protein ID:NP_699196Link to BLAST:NP_699196.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699196.2 567 Q6NXT6-1 567 100% 0 0

Chromosomal Locations for CCDS 47030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 16163308 16163537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16166633 16166793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16170653 16170729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16174204 16174272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16174670 16174729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16176119 16176228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16179577 16179657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16186535 16186604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16186781 16186878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16188220 16188355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16191361 16191523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16202462 16202580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16213768 16213898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16226259 16226457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGCGGGCGTCGGCGACGCGGCCGCTCCGGGAGAAGGCGGCGGTGGCGGCGTGGACGGCCCGCAGCGGG
ACGGCCGCGGCGAGGCGGAGCAGCCGGGCGGCAGCGGCGGACAGGGGCCCCCGCCGGCGCCTCAGCTCAC
AGAGACGCTGGGCTTCTACGAGAGCGACCGGCGGCGGGAGAGGCGCCGGGGCCGCACAGAGCTTTCATTG
TTGAGGTTCCTCAGTGCTGAACTAACAAGAGGGTACTTCCTTGAACATAATGAGGCCAAGTATACAGAAA
GAAGAGAAAGAGTATACACTTGTTTGCGAATACCAAGAGAATTGGAAAAGCTGATGGTTTTTGGAATCTT
TCTGTGCCTGGATGCGTTTTTGTATGTGTTCACCCTGCTTCCTTTAAGAGTTTTCCTGGCACTATTCAGG
CTCCTCACTTTGCCTTGCTATGGCTTAAGGGACAGACGTTTGCTTCAGCCTGCCCAGGTGTGTGACATTT
TGAAGGGTGTCATTTTGGTAATCTGCTATTTTATGATGCACTATGTTGACTACTCCATGATGTACCACCT
GATAAGGGGGCAGTCCGTCATCAAGCTCTACATCATCTACAACATGCTGGAGGTAGCTGATCGTCTGTTT
TCATCTTTTGGACAAGACATATTAGATGCTCTCTATTGGACAGCAACAGAGCCTAAAGAAAGAAAAAGAG
CCCACATTGGGGTGATTCCTCACTTTTTCATGGCTGTTCTCTATGTCTTTTTGCATGCAATTCTTATAAT
GGTTCAAGCAACAACTCTCAATGTAGCTTTTAACTCACACAACAAGTCTTTGCTTACTATCATGATGTCT
AATAATTTTGTTGAAATTAAAGGAAGTGTTTTCAAGAAGTTTGAAAAGAACAATCTCTTTCAAATGTCAA
ATAGCGATATTAAGGAACGATTCACAAATTATGTGCTTTTACTGATAGTGTGTCTAAGAAACATGGAACA
GTTTTCTTGGAATCCAGATCATCTCTGGGTGTTGTTTCCAGATGTCTGTATGGTAATTGCATCAGAAATT
GCCGTGGATATTGTAAAACATGCCTTTATTACTAAATTCAATGACATTACTGCAGATGTCTACAGTGAAT
ATAGAGCCAGTCTTGCTTTTGACCTTGTTAGCAGCCGACAGAAAAATGCATACACTGATTACAGTGACTC
TGTAGCACGGAGGATGGGCTTTATTCCTCTCCCACTAGCTGTTTTACTCATCAGAGTTGTAACAAGCTCA
ATTAAAGTGCAAGGAATCCTGTCTTATGCCTGTGTCATACTCTTCTATTTTGGGTTGATATCCCTGAAAG
TACTTAATAGCATCGTGCTGTTGGGGAAATCGTGCCAGTATGTGAAGGAAGCCAAAATGGAAGAGAAGCT
GTCGAATCCTCCCGCAACCTGCACTCCAGGCAAGCCGTCCAGTAAATCACAGAACAAATGTAAACCCTCT
CAAGGCCTTTCCACAGAAGAAAACCTGTCTGCCTCCATCACCAAACAACCTATTCATCAAAAGGAAAATA
TCATACCATTACTTGTGACAAGCAATTCTGATCAGTTTTTGACAACTCCAGATGGTGACGAGAAGGACAT
AACGCAGGACAATTCTGAATTAAAACACAGATCCTCAAAGAAAGATTTGTTAGAGATAGACAGGTTCACA
ATTTGTGGAAACCGAATTGACTGA

Translation (567 aa):
MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERRRGRTELSL
LRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFLALFR
LLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLF
SSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMS
NNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEI
AVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSS
IKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPSSKSQNKCKPS
QGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQDNSELKHRSSKKDLLEIDRFT
ICGNRID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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