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Report for CCDS47386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47386.1 Public Homo sapiens 6 HFE 24 110 108 CCDS HistoryNCBI Gene:3077Re-query CCDS DB by CCDS ID:47386.1Re-query CCDS DB by GeneID:3077See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47386.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336625.12 ENSP00000337819.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336625.12Link to Ensembl Protein Viewer:ENSP00000337819.8Re-query CCDS DB by Nucleotide ID:ENST00000336625Re-query CCDS DB by Protein ID:ENSP00000337819
Original member Current member NCBI NM_139003.3 NP_620572.1 Accepted alive Link to Nucleotide Sequence:NM_139003.3Link to Protein Sequence:NP_620572.1Re-query CCDS DB by Nucleotide ID:NM_139003Re-query CCDS DB by Protein ID:NP_620572Link to BLAST:NP_620572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620572.1 242 Q30201-10 242 100% 0 0

Chromosomal Locations for CCDS 47386.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26087441 26087516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26090841 26091104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26092727 26092960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26093119 26093232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26094186 26094226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGGCCCGCGAGCCAGGCCGGCGCTTCTCCTCCTGATGCTTTTGCAGACCGCGGTCCTGCAGGGGCGCT
TG
CTGCGTTCACACTCTCTGCACTACCTCTTCATGGGTGCCTCAGAGCAGGACCTTGGTCTTTCCTTGTT
T
GAAGCTTTGGGCTACGTGGATGACCAGCTGTTCGTGTTCTATGATCATGAGAGTCGCCGTGTGGAGCCC
CGA
ACTCCATGGGTTTCCAGTAGAATTTCAAGCCAGATGTGGCTGCAGCTGAGTCAGAGTCTGAAAGGGT
GG
GATCACATGTTCACTGTTGACTTCTGGACTATTATGGAAAATCACAACCACAGCAAGGTGACCACTCT
A
CGGTGTCGGGCCTTGAACTACTACCCCCAGAACATCACCATGAAGTGGCTGAAGGATAAGCAGCCAATG
GAT
GCCAAGGAGTTCGAACCTAAAGACGTATTGCCCAATGGGGATGGGACCTACCAGGGCTGGATAACCT
TG
GCTGTACCCCCTGGGGAAGAGCAGAGATATACGTGCCAGGTGGAGCACCCAGGCCTGGATCAGCCCCT
C
ATTGTGATCTGGGAGCCCTCACCGTCTGGCACCCTAGTCATTGGAGTCATCAGTGGAATTGCTGTTTTT
GTC
GTCATCTTGTTCATTGGAATTTTGTTCATAATATTAAGGAAGAGGCAGGGTTCAAGAGGAGCCATGG
GG
CACTACGTCTTAGCTGAACGTGAGTGA


Translation (242 aa):
MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEP
R
TPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSK
VTTLRCRALNYYPQNITMKWLKDKQPM
D
AKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIW
EPSPSGTLVIGVISGIAVF
V
VILFIGILFIILRKRQGS
RGAMGHYVLAERE



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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