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Report for CCDS47416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47416.1 Public Homo sapiens 6 PNPLA1 24 110 108 CCDS HistoryNCBI Gene:285848Re-query CCDS DB by CCDS ID:47416.1Re-query CCDS DB by GeneID:285848See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312917.9 ENSP00000321116.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312917.9Link to Ensembl Protein Viewer:ENSP00000321116.5Re-query CCDS DB by Nucleotide ID:ENST00000312917Re-query CCDS DB by Protein ID:ENSP00000321116
Original member Current member NCBI NM_001145716.2 NP_001139188.1 Accepted alive Link to Nucleotide Sequence:NM_001145716.2Link to Protein Sequence:NP_001139188.1Re-query CCDS DB by Nucleotide ID:NM_001145716Re-query CCDS DB by Protein ID:NP_001139188Link to BLAST:NP_001139188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139188.1 446 Q8N8W4-3 446 100% 0 0

Chromosomal Locations for CCDS 47416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36291400 36291552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36293061 36293126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36294163 36294399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36295364 36295424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36301861 36302469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36306292 36306376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36307587 36307716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGTGCAGATGATGAGGCAGTTTCTGTACCGGGTCCTGCCCGAGGACTCCTACAAGGTCACCACGGGGA
AGCTCCATGTGAGCCTCACCCGCTTAACGGACGGGGAGAATGTGGTGGTTTCAGAGTTCACGTCCAAGGA
GGAGCTCATTGAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTGTGGCCTCATCCCCCCGACTTAC
CGCGGTGTGTGGGCATTTCTCACTCTGCCCCCACAGAGGTACATCGATGGGGGCTTCACGGGCATGCAGC
CCTGTGCCTTCTGGACCGACGCCATCACCATCTCCACCTTCAGTGGGCAGCAGGACATCTGTCCCCGGGA
CTGCCCGGCCATCTTCCACGACTTCCGCATGTTCAACTGCTCCTTCCAGTTCTCCCTGGAGAACATCGCC
AGGATGACCCACGCATTGTTCCCCCCGGACCTGGTGATCCTGCACGATTACTACTACCGAGGGTACGAGG
ATGCAGTTTTGTACTTGAGGCGGCTGAATGCTGTTTATCTTAATTCTTCCTCCAAGAGAGTGATTTTCCC
CCGGGTGGAAGTGTACTGCCAGATAGAACTCGCCCTTGGCAATGAGTGCCCTGAACGCAGTCAACCAAGC
CTTCGAGCACGGCAGGCCAGTCTGGAAGGAGCCACACAACCTCACAAGGAGTGGGTTCCCAAAGGGGATG
GAAGGGGCAGCCATGGTCCGCCTGTGTCCCAACCTGTGCAGACACTTGAATTCACATGCGAGTCACCTGT
TTCAGCACCAGTCTCTCCACTTGAGCAGCCACCTGCACAGCCACTGGCCTCTTCAACTCCACTTTCTCTA
AGTGGCATGCCACCTGTATCATTCCCAGCTGTGCACAAGCCACCCAGCTCCACACCTGGTTCATCACTGC
CCACCCCACCACCTGGACTGTCACCTCTGTCACCTCAGCAGCAGGTACAACCGTCTGGATCACCAGCCAG
ATCCCTACACTCTCAGGCACCCACTTCACCCAGGCCATCCCTGGGGCCTTCAACTGTGGGGGCACCTCAA
ACACTGCCCCGAAGTTCTCTTTCAGCCTTCCCTGCTCAGCCACCTGTGGAGGAACTAGGCCAAGAACAGC
CCCAAGCTGTAGCTCTTCTTGTCTCTTCAAAACCAAAAAGCGCCGTGCCTCTGGTTCATGTGAAGGAAAC
CGTCAGCAAGCCTTATGTAACGGAGAGCCCTGCTGAAGACTCAAACTGGGTGAATAAGGTCTTCAAGAAG
AACAAGCAAAAGACAAGTGGCACCAGAAAAGGCTTCCCAAGACATTCGGGATCCAAAAAACCAAGCAGCA
AAGTGCAGTGA

Translation (446 aa):
MVQMMRQFLYRVLPEDSYKVTTGKLHVSLTRLTDGENVVVSEFTSKEELIEALYCSCFVPVYCGLIPPTY
RGVWAFLTLPPQRYIDGGFTGMQPCAFWTDAITISTFSGQQDICPRDCPAIFHDFRMFNCSFQFSLENIA
RMTHALFPPDLVILHDYYYRGYEDAVLYLRRLNAVYLNSSSKRVIFPRVEVYCQIELALGNECPERSQPS
LRARQASLEGATQPHKEWVPKGDGRGSHGPPVSQPVQTLEFTCESPVSAPVSPLEQPPAQPLASSTPLSL
SGMPPVSFPAVHKPPSSTPGSSLPTPPPGLSPLSPQQQVQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQ
TLPRSSLSAFPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETVSKPYVTESPAEDSNWVNKVFKK
NKQKTSGTRKGFPRHSGSKKPSSKVQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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