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Report for CCDS47698.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47698.2 Public Homo sapiens 7 PRRT4 24 110 108 CCDS HistoryNCBI Gene:401399Re-query CCDS DB by CCDS ID:47698.2Re-query CCDS DB by GeneID:401399See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47698.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47698.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489835.6 ENSP00000419296.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489835.6Link to Ensembl Protein Viewer:ENSP00000419296.2Re-query CCDS DB by Nucleotide ID:ENST00000489835Re-query CCDS DB by Protein ID:ENSP00000419296
Original member Current member NCBI NM_001114726.3 NP_001108198.2 Accepted alive Link to Nucleotide Sequence:NM_001114726.3Link to Protein Sequence:NP_001108198.2Re-query CCDS DB by Nucleotide ID:NM_001114726Re-query CCDS DB by Protein ID:NP_001108198Link to BLAST:NP_001108198.2
Current member NCBI NM_001405494.1 NP_001392423.1 Accepted alive Link to Nucleotide Sequence:NM_001405494.1Link to Protein Sequence:NP_001392423.1Re-query CCDS DB by Nucleotide ID:NM_001405494Re-query CCDS DB by Protein ID:NP_001392423Link to BLAST:NP_001392423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108198.2 429 C9JH25-2 429 100% 0 0
NP_001392423.1 429 C9JH25-2 429 100% 0 0

Chromosomal Locations for CCDS 47698.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128351232 128351414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128352449 128352678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128358681 128358800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128359149 128359253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128359340 128359991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCCAGGCATGGCTGTCTAGGGCTGGGACTGTTCTGCTGCGTCCTGTTTGCTGCTACTGTGGGCCCCC
AGCCCACCCCCTCCATCCCAGGTGCCCCTGCCACCACTTTGACCCCCGTACCTCAAAGTGAGGCCTCTAT
GCTGTCTCTCAACCTGGGACTTAACTTCAAATTCCATCTTCGGGGACCTGCTGCTGTCTGGGGGAGCCCA
GTCACAGAGACCCAGCCACTCTCTCTTGGGCCAGGCCAGGAGCCAGGGGAAGAGGTGGCCAGTGGGCTGA
GGACTGACCCCCTTTGGGAATTGCTGGTGGGCTCCTCAGGGAACTCTCTCACTGAGTGGGGCTCCACCGA
AGGTGGCTCAAAGCCCCGGGCCTCCTCCCTGCTTCCGGAGTCCACATCCCGGCGCTCTGGGCCCAGCGAT
GGGCCCACTGCCCCCTATCAGCCCAGGAGGAGCACTGTGACCTGGGACACTGCTCTGATGGTGACAGCAC
TTCCATCCAGTGCTCCCAGGCCCCACCAGAGCGAGCTGGAGCTGAAGTTTGACATGGCACTGAGAGCAGG
TGCAGCCCCCACGCTTGGGCATCGAACGCTGCCCCTGCTGCCCAGCCTGCGGGCCAGCCTGGCAGAGATT
GCTGGGCGCCTGGGACCCTTTGGATTCTTTGGCACTACTCTGTCCCCACTCCGGAACTTCTCCGGCCTGA
GCCCCCCAGGTGAAACTACATCCACAAGCTCTGCCTCTGGAGTTTCGGGTTCTCTGGGGTTCCTTGGTAC
CACTCTGTCCCTGCCCCCATACTCCCTGGAGAGGAAGCTCTCCAGCCCAAGTCCTCTGGACCCAGCTGCT
TCCCTAAGTTTTGCCTCGATTGCAACAACATCATTAGACCCCACAGTCCCCATCTCTGGCCCAGATGACC
TCTCTCCTCCCGCCAGCCTCGGGAACCCTTCGGGGCAGCCAGAGTGTGGGCCAGGGTCCTGCAGCGTGGG
AGAATTGCCTGAACGCGAGGGGCAGCCTCCCGAGGCGCCGAGGCCCCTCTTTTTCCTGACCCTGGAGGCC
GACTGGGCAGAGGCCAGGGCTCGCTGGGGGCTGGCCTGGGAGGCCCACGTGTACGGGCGATTACACCGTG
GACTTCCGCCCGCCCTCCCCAATCAACCTGCGACGCAGCATCGAGGAGGCCCTCTGCAGCGAGGCCCTGC
TTGCGCCTGGCCTCTTCCAGGGCCCTGCCTTCGAGGACGCTCTGCCTGGGCTCGGACTCTACCGCACCGC
CTCGCTGGGGACCGGGGGCAGGGCCAGTGA

Translation (429 aa):
MARHGCLGLGLFCCVLFAATVGPQPTPSIPGAPATTLTPVPQSEASMLSLNLGLNFKFHLRGPAAVWGSP
VTETQPLSLGPGQEPGEEVASGLRTDPLWELLVGSSGNSLTEWGSTEGGSKPRASSLLPESTSRRSGPSD
GPTAPYQPRRSTVTWDTALMVTALPSSAPRPHQSELELKFDMALRAGAAPTLGHRTLPLLPSLRASLAEI
AGRLGPFGFFGTTLSPLRNFSGLSPPGETTSTSSASGVSGSLGFLGTTLSLPPYSLERKLSSPSPLDPAA
SLSFASIATTSLDPTVPISGPDDLSPPASLGNPSGQPECGPGSCSVGELPEREGQPPEAPRPLFFLTLEA
DWAEARARWGLAWEAHVYGRLHRGLPPALPNQPATQHRGGPLQRGPACAWPLPGPCLRGRSAWARTLPHR
LAGDRGQGQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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