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Report for CCDS48141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48141.1 Public Homo sapiens X PCDH19 24 110 108 CCDS HistoryNCBI Gene:57526Re-query CCDS DB by CCDS ID:48141.1Re-query CCDS DB by GeneID:57526See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420881.6 ENSP00000400327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420881.6Link to Ensembl Protein Viewer:ENSP00000400327.2Re-query CCDS DB by Nucleotide ID:ENST00000420881Re-query CCDS DB by Protein ID:ENSP00000400327
Original member Current member NCBI NM_020766.3 NP_065817.2 Accepted alive Link to Nucleotide Sequence:NM_020766.3Link to Protein Sequence:NP_065817.2Re-query CCDS DB by Nucleotide ID:NM_020766Re-query CCDS DB by Protein ID:NP_065817Link to BLAST:NP_065817.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065817.2 1100 Q8TAB3-3 1100 100% 0 0

Chromosomal Locations for CCDS 48141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100296277 100296875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100341903 100342072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100350646 100350704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100402524 100402851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100406451 100408597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGGAGTCGCTCCTGCTGCCGGTGCTGCTGCTGCTGGCCATACTGTGGACGCAGGCTGCCGCCCTCATTA
ATCTCAAGTACTCGGTAGAAGAGGAGCAGCGCGCCGGGACGGTGATTGCCAACGTGGCCAAAGACGCGCG
AGAGGCGGGCTTCGCGCTGGACCCCCGGCAGGCTTCAGCCTTTCGCGTGGTGTCCAACTCGGCTCCACAC
CTAGTGGACATCAATCCCAGCTCTGGCCTGCTGGTCACCAAGCAGAAGATTGACCGTGATCTGCTGTGCC
GCCAGAGCCCCAAGTGCATCATCTCGCTCGAGGTCATGTCCAGCTCAATGGAAATCTGCGTGATAAAGGT
GGAGATCAAGGACCTGAACGACAATGCGCCCAGTTTCCCGGCAGCACAGATCGAGCTGGAGATCTCGGAG
GCAGCCAGCCCTGGCACGCGCATCCCGCTGGACAGCGCTTACGATCCAGACTCAGGAAGCTTTGGCGTGC
AGACTTACGAGCTCACGCCCAACGAGCTGTTCGGCCTGGAGATCAAGACGCGCGGCGACGGCTCCCGCTT
TGCCGAACTCGTGGTGGAAAAGAGCCTGGACCGCGAGACGCAGTCGCACTACAGCTTCCGAATCACTGCG
CTAGACGGTGGCGACCCGCCGCGCCTGGGCACCGTTGGCCTTAGTATCAAGGTGACCGACTCCAATGACA
ACAACCCGGTGTTTAGCGAGTCCACCTACGCGGTGAGCGTGCCAGAAAACTCGCCTCCCAACACACCCGT
CATCCGCCTCAACGCCAGCGATCCAGACGAGGGCACCAACGGCCAGGTGGTCTACTCCTTCTATGGCTAC
GTCAACGACCGCACGCGCGAGCTCTTTCAGATCGACCCGCACAGTGGCCTGGTCACTGTCACTGGCGCTT
TAGACTACGAAGAGGGGCACGTGTACGAACTGGACGTGCAGGCTAAGGACTTGGGGCCCAATTCCATCCC
GGCACACTGCAAGGTCACCGTCAGCGTGCTGGACACCAATGACAATCCGCCGGTCATCAACCTGCTGTCA
GTCAACAGTGAGCTTGTGGAGGTCAGCGAGAGCGCCCCCCCGGGCTACGTGATCGCCTTGGTGCGGGTGT
CTGATCGCGACTCAGGCCTCAATGGACGTGTGCAGTGCCGTTTGCTGGGCAATGTGCCCTTTCGACTGCA
GGAATATGAGAGCTTCTCCACTATTCTGGTGGACGGACGGCTGGACCGCGAGCAGCACGACCAATACAAC
CTCACAATTCAGGCACGCGACGGCGGCGTGCCCATGCTGCAGAGTGCCAAGTCCTTTACCGTGCTCATCA
CTGACGAAAATGACAACCACCCGCACTTTTCCAAGCCCTACTACCAGGTCATTGTGCAGGAGAACAACAC
GCCTGGCGCCTATCTGCTCTCTGTGTCTGCTCGCGACCCCGACCTGGGTCTCAACGGCAGTGTCTCCTAC
CAGATCGTGCCGTCGCAGGTGCGGGACATGCCTGTCTTCACCTATGTCTCCATCAATCCCAACTCAGGCG
ACATCTACGCGCTGCGATCCTTTAACCACGAGCAGACCAAGGCGTTCGAATTCAAGGTGCTGGCCAAGGA
CGGCGGCCTTCCCTCACTGCAAAGCAACGCTACGGTGCGGGTCATCATCCTCGACGTCAACGACAACACC
CCGGTCATCACAGCCCCACCTCTGATTAACGGCACTGCCGAGGTCTACATACCCCGCAACTCTGGCATAG
GCTACCTGGTGACTGTTGTCAAGGCAGAAGACTACGATGAGGGCGAAAATGGCCGAGTCACCTACGACAT
GACCGAGGGCGACCGCGGCTTCTTTGAAATAGACCAGGTCAATGGCGAAGTCAGAACCACCCGCACCTTC
GGGGAGAGCTCCAAGTCCTCCTATGAGCTTATCGTGGTGGCTCACGACCACGGCAAGACATCTCTCTCTG
CCTCTGCTCTCGTCCTAATCTACTTGTCCCCTGCTCTCGATGCCCAAGAGTCAATGGGCTCTGTGAACTT
GTCCTTGATTTTCATTATTGCCCTGGGCTCCATTGCGGGCATCCTCTTTGTAACTATGATCTTCGTGGCA
ATCAAGTGCAAGCGAGACAACAAAGAGATCCGGACCTACAACTGCAGAATTGCTGAGTACTCCTATGGGC
ATCAAAAGAAATCAAGCAAGAAGAAAAAAATCAGTAAGAATGACATCCGCCTGGTACCCCGGGATGTGGA
GGAGACAGACAAGATGAACGTTGTCAGTTGCTCTTCCCTGACCTCCTCCCTCAACTATTTTGACTACCAC
CAGCAGACGCTGCCCCTGGGCTGCCGCCGCTCTGAGAGCACTTTCCTGAATGTGGAGAACCAGAATACCC
GCAACACCAGTGCTAACCACATCTACCATCACTCTTTCAACAGCCAGGGGCCCCAGCAGCCTGACCTGAT
TATCAACGGTGTGCCTCTGCCTGAGACTGAAAACTATTCTTTTGACTCCAACTACGTGAATAGCCGAGCC
CATTTAATCAAGAGCTCCACCTTCAAGGACTTAGAGGGCAACAGCCTGAAGGATAGTGGACATGAGGAGA
GTGACCAAACTGACAGTGAGCATGATGTCCAGCGGAGCCTGTATTGTGATACTGCTGTCAACGATGTGCT
GAACACCAGTGTGACCTCCATGGGATCTCAGATGCCTGATCATGATCAGAATGAAGGATTTCATTGCCGG
GAAGAATGCCGGATTCTTGGCCACTCTGACAGGTGCTGGATGCCCCGGAACCCCATGCCCATCCGTTCCA
AGTCCCCTGAGCATGTGAGGAACATCATCGCGCTGTCTATTGAAGCTACTGCTGCTGATGTCGAGGCTTA
TGACGACTGCGGCCCCACCAAACGGACTTTCGCAACCTTTGGGAAAGATGTCAGCGACCACCCGGCTGAG
GAGAGGCCTACCCTGAAAGGCAAGAGGACTGTCGATGTGACCATCTGCAGCCCCAAGGTCAACAGCGTTA
TCCGGGAGGCAGGCAATGGCTGTGAGGCGATTAGCCCTGTCACCTCCCCCCTCCACCTCAAGAGCTCTCT
GCCCACCAAGCCTTCCGTGTCTTACACCATTGCCCTGGCTCCCCCAGCCCGTGATCTGGAGCAGTATGTC
AACAATGTCAACAATGGCCCTACTCGTCCCTCTGAAGCTGAGCCCCGTGGAGCTGATAGCGAGAAAGTCA
TGCATGAGGTCAGCCCCATTCTGAAGGAAGGTCGCAACAAAGAGTCCCCTGGTGTGAAGCGTCTGAAGGA
TATCGTTCTCTAA

Translation (1100 aa):
MESLLLPVLLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPH
LVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISE
AASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA
LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGY
VNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLS
VNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDGGVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSY
QIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNT
PVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF
GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVA
IKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYH
QQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRA
HLIKSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCR
EECRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPAE
ERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQYV
NNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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